View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378R-Insertion-11 (Length: 305)
Name: NF3378R-Insertion-11
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-11 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 6145632 - 6145931
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaacatgtcttcatcacaagaaacattttgggatcatttcctgatgaatgaagacgatgat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6145632 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaacatgtcttcatcacaagaaacattttgggatcatttcctgatgaatgaagatgatgat |
6145731 |
T |
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| Q |
107 |
ataaatgcaggaccaagtagtgctacaaatcgg-ccgaaattaatagccctccacatgttaggttattcctagaaggtggtgtgaatcaaattccttctc |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6145732 |
ataaatgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctccacatgttaggttattcctagaaggtcgtgtgaatcaaattccttctc |
6145831 |
T |
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| Q |
206 |
caacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctcc |
305 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145832 |
caacaattgttcctgtgtggcccagtagttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctcc |
6145931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 6126213 - 6126515
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaagacgat |
103 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||| |||||| | || ||||||||||||||||| | ||| ||||| ||||||| | | |
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| T |
6126213 |
cactcttcctcctccttttcatattcatcaagacaatgtcaacacgtcttctttaccgcaagaaacattttgggataagttcttgatgtatgaagatgct |
6126312 |
T |
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| Q |
104 |
gatataaatgcaggaccaagtagtgctacaaatcggc-cgaaattaatagccctccacatgttaggttattcctagaaggtggtgtgaatcaaattcctt |
202 |
Q |
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|||||| |||||||||||||||||||||| | || | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |
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| T |
6126313 |
gatatagatgcaggaccaagtagtgctactactcagttcgaaattaatagccctccacatgttaggttattctcagaaggtcgtgtgaatcaaattgctt |
6126412 |
T |
|
| Q |
203 |
ctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccc |
302 |
Q |
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| |||| ||||| || ||||||||||||| ||| | ||||||| |||||| |||||| |||||||||||||| | ||||||| || ||||||||||||| |
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| T |
6126413 |
caccaaaaattgctcatgtgtggcccagtagttctataccaccacaacaaccaataacaacttcagacgcttcgctgagtaattataaccggctaaaccc |
6126512 |
T |
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| Q |
303 |
tcc |
305 |
Q |
| |
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||| |
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| T |
6126513 |
tcc |
6126515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 290
Target Start/End: Original strand, 34283569 - 34283700
Alignment:
| Q |
159 |
acatgttaggttattcctagaaggtggtgtgaatcaaattccttctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaata |
258 |
Q |
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||||||||||||||| ||||||| |||||||| ||||||||||||||| ||| ||| ||||||||| | | ||| ||||||||| | |||| ||||| |
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| T |
34283569 |
acatgttaggttattgacagaaggtcttgtgaatcgaattccttctccaactatttttcatgtgtggcctattagttttgtaccaccacgacaaccaata |
34283668 |
T |
|
| Q |
259 |
atgacttcagacgcttcaccgagtaataatta |
290 |
Q |
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| T |
34283669 |
acgacttcagatcctccatcgagtaattatta |
34283700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 34283003 - 34282889
Alignment:
| Q |
160 |
catgttaggttattcctagaaggtggtgtgaatcaaattccttctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataa |
259 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| | ||||| | ||||||||| || ||| |||| |||| | |||| |||||| |
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| T |
34283003 |
catgttaggttattgacagaaggtcatgtgaatcaaattccttctccatctattgtgcatgtgtggcctggtagttttgta-caccacgacaaccaataa |
34282905 |
T |
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| Q |
260 |
tgacttcagacgcttc |
275 |
Q |
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|||||||||| |||| |
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| T |
34282904 |
cgacttcagacccttc |
34282889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 33731503 - 33731372
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaagac |
100 |
Q |
| |
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|||| |||||||||||||||||| | |||||||||||||| ||||||||||| | || | ||||||||||||||||||| | ||| ||||||| |
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| T |
33731503 |
cactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagat |
33731404 |
T |
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| Q |
101 |
gatgatataaatgcaggaccaagtagtgctac |
132 |
Q |
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| T |
33731403 |
gttgatgtagaagcaggactaagtagtactac |
33731372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 33802882 - 33802751
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaagac |
100 |
Q |
| |
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|||| |||||||||||||||||| | |||||||||||||| ||||||||||| | || | ||||||||||||||||||| | ||| ||||||| |
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| T |
33802882 |
cactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagat |
33802783 |
T |
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| Q |
101 |
gatgatataaatgcaggaccaagtagtgctac |
132 |
Q |
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| T |
33802782 |
gttgatgtagaagcaggactaagtagtactac |
33802751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 6152049 - 6152117
Alignment:
| Q |
237 |
tgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctcc |
305 |
Q |
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| T |
6152049 |
tgtaccaccacggcaaccaataacgactttaaacccttcaccgagtaattattaccagctaaaccctcc |
6152117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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