View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378R-Insertion-12 (Length: 190)
Name: NF3378R-Insertion-12
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 5e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 5e-69
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 28689864 - 28690041
Alignment:
| Q |
9 |
gttaatatgtagtattttaatttgcattatagttcatttgawattttaaccacactcaaattgaatgtctgggtcctcccctgattgaagtaaataaaat |
108 |
Q |
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| T |
28689864 |
gttaatatatagtattttaatttgcatcatagttcatttgatattctaaccacacccaaatcgaatgtctgggtcctcccctgattgaagtaaataaatc |
28689963 |
T |
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| Q |
109 |
tggattttcttgatttaggat-aggttacaaaaagttatgtttatctgtgtggatttgattttgatttgacagatatt |
185 |
Q |
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| T |
28689964 |
tggattttcttgatttaggatctggttacaaaaagttatgtttatctgtgtggatttgattttgattcgacagatatt |
28690041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 51926205 - 51926147
Alignment:
| Q |
111 |
gattttcttgatttaggata-ggttacaaaaagttatgtttatctgtgtggatttgatt |
168 |
Q |
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| T |
51926205 |
gattatcttgatttaggatctggttacaaaaagttctatttatctgtgtggatttgatt |
51926147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 28778096 - 28778034
Alignment:
| Q |
109 |
tggattttcttgatttaggat-aggttac-aaaaagttatgttt-atctgtgtggatttgatt |
168 |
Q |
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| T |
28778096 |
tggattttcttgatttaggatctggttacaaaaaagttctgtttcatctgtgtggatttgatt |
28778034 |
T |
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