View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3378R-Insertion-2 (Length: 937)
Name: NF3378R-Insertion-2
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 292 - 613
Target Start/End: Original strand, 5810759 - 5811080
Alignment:
| Q |
292 |
gattgaattgtccgactcttctaacgccctgataaacattttcatacacttgcataaattataatcagaaatgacaagtaccaactgaaaatatttccac |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5810759 |
gattgaattgtccgactcttctaacgccctgataaacattttcatacagttgcataaattataatcagaaatgacaagtaccaactgaaaatatttccat |
5810858 |
T |
|
| Q |
392 |
tggcaggggattatccaattgcaacctattttgatttattgcataaaacatttcatataaattccaaaagatttttggaatgtttaagaacttttctata |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5810859 |
tggcaggggattatccaattgcaacctattttgatttattgcagaaaacatttcatataaattccaaaagatttttggaatgtttaagaacttttctata |
5810958 |
T |
|
| Q |
492 |
actcaaaccaatatagtacatagtaatacctattatttttcaggacaaggactaagtgaaaaatccagattttgatcattaagtacaaaatataccattt |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5810959 |
actcaaaccaatatagtacatagtaatacctattatttttcaggacaaggactaagtgaaaaatccagattttgatcattaagtacaaaatatactattt |
5811058 |
T |
|
| Q |
592 |
taactagttaaaagtattattt |
613 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5811059 |
taactagttaaaagtattattt |
5811080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 5810516 - 5810750
Alignment:
| Q |
9 |
cattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctctcttcttctct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5810516 |
cattaaccataaagaaacatactgtatcagggcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctttcttcttctct |
5810615 |
T |
|
| Q |
109 |
tcgttgtttgagagtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacatgacaatccaatttaacgttgt |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5810616 |
tcgttgtttgagagtttttgt-------tccttggaaacaattttcctacaacatgtaaaccataaaatgacaacacatgacaatccaatttaacgttgt |
5810708 |
T |
|
| Q |
209 |
ccatgatgcaacattattccttactcttcattgtttgaacgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5810709 |
ccatgatgcaacattattccttactcttcattgtttgaacgt |
5810750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 637 - 918
Target Start/End: Original strand, 5811098 - 5811380
Alignment:
| Q |
637 |
cacaacgaagacactcttggatactcatcagtctttaaaagtaaaatggacaaaatattgttttatgtctacatctgcaacctgaagtttctttcnnnnn |
736 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5811098 |
cacaaccaaaacactcttggatactcatcagtctttaaaagtaaaatggacaaaatattg-tttatgtctacatctgcaacctgaagtttctttcaaaaa |
5811196 |
T |
|
| Q |
737 |
nntgacttaatgctttaaaagaaccccctcacaaattcta---ctgctgaaccatgggaaactaaaagaaaaatttacaatataacaatagtcggtatta |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811197 |
aatgacttaatgctttaaaagaaccccctcacaaattctactgctgctgaaccat-ggaaactaaaagaaaaatttacaatataacaatagtcggtatta |
5811295 |
T |
|
| Q |
834 |
atgggagatgag-aaacaatttgtatccatctagttgttattacctggctgc-aaatctggaactgagaaatggataataagctatt |
918 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
5811296 |
at-ggagatgagaaaacaatttgtatccatctagttgttattacctggctgcaaaatctggaactgagaaatgaat-ataagctatt |
5811380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 6e-95; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 37740632 - 37740968
Alignment:
| Q |
22 |
gaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctctcttcttctcttcgttgtttgaga |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
37740632 |
gaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagctgctttcctttcttcttctcttcgttgtttgaga |
37740731 |
T |
|
| Q |
122 |
gtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacatgacaatccaa--------tttaacgttgtccatg |
213 |
Q |
| |
|
||||| | ||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| |||| ||| |
|
|
| T |
37740732 |
gttttagagccttggttcttg---------ttcctacaacatgtaaaccataaaatgacaatacatgataatgcaaatatacaatttaacattgttgatg |
37740822 |
T |
|
| Q |
214 |
atgcaacattattccttactcttcattgtttgaacgtcttggtatagctggcataacatgtaataatctcccctggaagattgaattgtccgactcttct |
313 |
Q |
| |
|
| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37740823 |
aagcaatattatgccttactcttcattgtttgaatgtcttggtatagctggcataacatgcaataatctcccctggaagattgaattgtccgactcttct |
37740922 |
T |
|
| Q |
314 |
aacgccctgataaacattt-tcatacacttgcataaattataatca |
358 |
Q |
| |
|
| ||||||||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
37740923 |
agcgccctgataaacatttatcatacaattgcataaattacaatca |
37740968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 37756843 - 37757172
Alignment:
| Q |
22 |
gaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctctcttcttctcttcgttgtttgaga |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
37756843 |
gaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagctgctttcctttcttccactcttcgttgtttgaga |
37756942 |
T |
|
| Q |
122 |
gtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacatgacaatccaa--------tttaacgttgtccatg |
213 |
Q |
| |
|
||||| | ||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| ||| ||| |
|
|
| T |
37756943 |
gttttagagccttggttcttg---------ttcctacaacatgtaaaccataaaatgacaatacatgataatgcaaatatacaatttaacactgttgatg |
37757033 |
T |
|
| Q |
214 |
atgcaacattattccttactcttcattgtttgaacgtcttggtatagctggcataacatgtaataatctcccctggaagattgaattgtccgactcttct |
313 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37757034 |
aagcaatattatgtcttactcttcattgtttgaatgtattggtatagctgcaataacatgcaataatctcccctggaagattgaattgtccgactcttct |
37757133 |
T |
|
| Q |
314 |
aacgccctgataaacattt-tcatacacttgcataaatt |
351 |
Q |
| |
|
| ||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
37757134 |
agcgccctgataaacatttatcatacaattgcattaatt |
37757172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 37762591 - 37762920
Alignment:
| Q |
22 |
gaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctctcttcttctcttcgttgtttgaga |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
37762591 |
gaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagctgctttcctttcttccactcttcgttgtttgaga |
37762690 |
T |
|
| Q |
122 |
gtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacatgacaatccaa--------tttaacgttgtccatg |
213 |
Q |
| |
|
||||| | ||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| ||| ||| |
|
|
| T |
37762691 |
gttttagagccttggttcttg---------ttcctacaacatgtaaaccataaaatgacaatacatgataatgcaaatatacaatttaacactgttgatg |
37762781 |
T |
|
| Q |
214 |
atgcaacattattccttactcttcattgtttgaacgtcttggtatagctggcataacatgtaataatctcccctggaagattgaattgtccgactcttct |
313 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37762782 |
aagcaatattatgtcttactcttcattgtttgaatgtattggtatagctgcaataacatgcaataatctcccctggaagattgaattgtccgactcttct |
37762881 |
T |
|
| Q |
314 |
aacgccctgataaacattt-tcatacacttgcataaatt |
351 |
Q |
| |
|
| ||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
37762882 |
agcgccctgataaacatttatcatacaattgcattaatt |
37762920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 38604318 - 38604154
Alignment:
| Q |
16 |
cataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctctcttcttctcttcgttgt |
115 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| ||||| |||||||||||| |
|
|
| T |
38604318 |
cataaggaaacatactgtatcctggcgcatgaacagactattccatgctctggtatctcctttagcttcagctgctttcctttcttcctctcttcgttgt |
38604219 |
T |
|
| Q |
116 |
ttgagagtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacatga |
189 |
Q |
| |
|
||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38604218 |
ttgtgagttttagagccttggtcc---------ttgttcctacaacatgtaaaccataaaatgacaatacatga |
38604154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 38603511 - 38603437
Alignment:
| Q |
258 |
tagctggcataacatgtaataatctcccctggaagattgaattgtccgactcttctaacgccctgataaacattt |
332 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38603511 |
tagctggtataacacgcaataatctcccctggaagattgaattgttcgactcttctagcgccctgataaacattt |
38603437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 681 - 918
Target Start/End: Complemental strand, 38602410 - 38602179
Alignment:
| Q |
681 |
aatggacaaaatattgttttatgtctacatctgcaacctgaagtttctttcnnnnnnn-tgacttaatgctttaaaagaaccccctcacaaattctactg |
779 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||||||||||||||||||||| |||||| |||||| ||||| | ||||| |||||||||| | |
|
|
| T |
38602410 |
aatggacaaaagattattt-atgcctacatctgcaacctgaagtttctttaaaaaaaaatgacttgatgcttcaaaagcattccctcgcaaattctacag |
38602312 |
T |
|
| Q |
780 |
ctgaaccatgggaaactaaaagaaaaatttacaatataacaatagtcggtattaatgggagatgaga-aacaatttgtatccatctagttgttattacct |
878 |
Q |
| |
|
|| ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||| | ||||| ||| |||| |||||||||||||| |||||| |
|
|
| T |
38602311 |
ctcaaccatg---aacaaaaagaaagatttacaatataacaatagttggtataaat-taacgtgagacaactatttctatccatctagttg---ttacct |
38602219 |
T |
|
| Q |
879 |
ggctgcaaa-tctggaactgagaaatggataataagctatt |
918 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||| |||||||| |
|
|
| T |
38602218 |
ggctgcaaattctggaactgaaaaatgaataa-aagctatt |
38602179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 38603297 - 38603189
Alignment:
| Q |
401 |
attatccaattgcaacctattttgatttattgcataaaacatttcatataaattccaaaagatttttggaatgtttaagaacttttctataactcaaacc |
500 |
Q |
| |
|
||||| ||||| ||||||| || |||| |||||| |||| ||||| ||||||||||| || || || |||||||| |||||||||| |||||||||||| |
|
|
| T |
38603297 |
attatgcaattccaacctacttcgattcattgcagaaaatatttccaataaattccaacaggttcttagaatgttttagaacttttcgataactcaaacc |
38603198 |
T |
|
| Q |
501 |
aatatagta |
509 |
Q |
| |
|
||| ||||| |
|
|
| T |
38603197 |
aatgtagta |
38603189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 532 - 613
Target Start/End: Original strand, 37741238 - 37741320
Alignment:
| Q |
532 |
caggacaaggactaagtgaaaaatccagattttgatcatt-aagtacaaaatataccattttaactagttaaaagtattattt |
613 |
Q |
| |
|
|||||||||| | ||||| |||||||| |||||||||||| || |||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
37741238 |
caggacaaggcccaagtggaaaatccaaattttgatcatttaaatacaaaatatactattttagctagttacaagtattattt |
37741320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 429 - 509
Target Start/End: Original strand, 37757321 - 37757401
Alignment:
| Q |
429 |
attgcataaaacatttcatataaattccaaaagatttttggaatgtttaagaacttttctataactcaaaccaatatagta |
509 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || || || |||||||| |||||||||| |||||||||| |||||||||| |
|
|
| T |
37757321 |
attgcagaaaacatttccaataaattccaagaggttcttagaatgttttagaacttttcgataactcaaaacaatatagta |
37757401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 429 - 509
Target Start/End: Original strand, 37763069 - 37763149
Alignment:
| Q |
429 |
attgcataaaacatttcatataaattccaaaagatttttggaatgtttaagaacttttctataactcaaaccaatatagta |
509 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || || || |||||||| |||||||||| |||||||||| |||||||||| |
|
|
| T |
37763069 |
attgcagaaaacatttccaataaattccaagaggttcttagaatgttttagaacttttcgataactcaaaacaatatagta |
37763149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 740 - 909
Target Start/End: Original strand, 37758220 - 37758381
Alignment:
| Q |
740 |
gacttaatgctttaaaagaaccccctcacaaattctactgctgaaccatgggaaactaaaagaaaaatttacaatataacaatagtcggtattaatggga |
839 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| || ||||||| ||| |||||||| ||||||||||||| |||| ||||| ||| | |
|
|
| T |
37758220 |
gacttaatgcttcaaaagcattccctcacaaattctacaactcaaccatg---aacaaaaagaaagatttacaatataa---tagttggtataaatta-a |
37758312 |
T |
|
| Q |
840 |
gatgaga-aacaatttgtatccatctagttgttattacctggctgcaaa-tctggaactgagaaatggataa |
909 |
Q |
| |
|
| ||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
37758313 |
ggtgagacaacaatttctatccatctagttg---ttacctggctgcaaattctggaactgaaaaatgaataa |
37758381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 740 - 909
Target Start/End: Original strand, 37763968 - 37764129
Alignment:
| Q |
740 |
gacttaatgctttaaaagaaccccctcacaaattctactgctgaaccatgggaaactaaaagaaaaatttacaatataacaatagtcggtattaatggga |
839 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| || ||||||| ||| |||||||| ||||||||||||| |||| ||||| ||| | |
|
|
| T |
37763968 |
gacttaatgcttcaaaagcattccctcacaaattctacaactcaaccatg---aacaaaaagaaagatttacaatataa---tagttggtataaatta-a |
37764060 |
T |
|
| Q |
840 |
gatgaga-aacaatttgtatccatctagttgttattacctggctgcaaa-tctggaactgagaaatggataa |
909 |
Q |
| |
|
| ||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||| |||| |
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| T |
37764061 |
ggtgagacaacaatttctatccatctagttg---ttacctggctgcaaattctggaactgaaaaatgaataa |
37764129 |
T |
|
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