View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378R-Insertion-4 (Length: 700)
Name: NF3378R-Insertion-4
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 16641617 - 16641848
Alignment:
| Q |
9 |
aattttgtatgttttgttatgaccaatcacaaattttaatatgatattaaaacctccttcgatatcaattgatttatttgctatcagtcttatgttatcg |
108 |
Q |
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| T |
16641617 |
aattttatatgttttgttatgaccaatcacgaattttaatatgatattaaaacctccttcgatatcaattgatttatttgctatcagtcttatgttatcg |
16641716 |
T |
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| Q |
109 |
gaccatatatcaattatatctatgcaccaaagttcaatagtattgggtggaatcctcacctacaaaatt-attttgtggggttacaagaacaactcatat |
207 |
Q |
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| T |
16641717 |
gaccatacatcaattatatctatgcaccaaagttcaatagtgttggctggaatcctcacctacaaaattgattttgtggggttacaagaacaactcatat |
16641816 |
T |
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| Q |
208 |
aggagattttaatagtttatcactttgggttgtaa |
242 |
Q |
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| T |
16641817 |
agtagagtttaatagt---tcactttgggttgtaa |
16641848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 361 - 575
Target Start/End: Original strand, 16642422 - 16642635
Alignment:
| Q |
361 |
tcactttgaaacaatgtttgcaacgaacaactttttagatgttcatcaataggtgaaactatggtaagagattaaaagctaggactattctaaaactaat |
460 |
Q |
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| T |
16642422 |
tcaccttgaaacaatgtttgcaatgaacaactttttagatgttcatcaacaggtgaaactatgctaagagattaaaagctaggac--ttctaaaactaat |
16642519 |
T |
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| Q |
461 |
ttctttgattaarttattcgttcatcaattactattgatttaaattagaaattgac--attttttaatagacataataatggctcgtcatattagatttg |
558 |
Q |
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| T |
16642520 |
ttctttgattaa-ttattcgttcgtcaattactattgatataaattagaaattgacatattctttaatagacatgataataactcgtcatattagattcg |
16642618 |
T |
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| Q |
559 |
tctagattcttttaaaa |
575 |
Q |
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| T |
16642619 |
tctagattcttttaaaa |
16642635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 612 - 652
Target Start/End: Original strand, 16642720 - 16642760
Alignment:
| Q |
612 |
tttatcaattaaygtatgttgaaattattaagggtgtttta |
652 |
Q |
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| T |
16642720 |
tttatcaattaatgtatgttgaaattattaagggtgtttta |
16642760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Original strand, 16642801 - 16642844
Alignment:
| Q |
654 |
ttaatgaagaaaagaagaaggsaaataagtatggagattcacta |
697 |
Q |
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| T |
16642801 |
ttaacgaaggaaagaagaagggaaataagtatgaagattcacta |
16642844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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