View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3378R-Insertion-5 (Length: 572)
Name: NF3378R-Insertion-5
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-5 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Complemental strand, 28289318 - 28288755
Alignment:
| Q |
9 |
aacaaccccaaaactataaacatctgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28289318 |
aacaaccccaaaactatacacatctgactctttgctagccttacctgtacttatatattctggagccaaatagcctaaggttccggcaaccactgttgtt |
28289219 |
T |
|
| Q |
109 |
tggggtccaatctcatggtccattagtttagccaacccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctc |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28289218 |
tggggtccaatctcatgatccattagtttagccaacccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttgatatctc |
28289119 |
T |
|
| Q |
209 |
tatgaaccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagaggtgtcct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28289118 |
tatgaaccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagaggtgtcct |
28289019 |
T |
|
| Q |
309 |
ttttccgaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttctcatggcaccaacctaagagcttcacaaga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
28289018 |
ttttccgaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcctaagagcttcacaaga |
28288919 |
T |
|
| Q |
409 |
ttccgatgtctcagctggctaataactttcacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaat |
508 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28288918 |
ttcctatgtctcagctggctaataactttaacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaat |
28288819 |
T |
|
| Q |
509 |
cttgatcaaaaaagtaacctttataaactgctcc-aaaccaccttgacctaatttttctatcgtc |
572 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
28288818 |
cttgatcgaaaaagtaacctttataaacagctccaaaaccaccttgacctaa-ttttctatcgtc |
28288755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Original strand, 28264418 - 28264966
Alignment:
| Q |
9 |
aacaaccccaaaactataaacatctgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28264418 |
aacaaccccaaaactatacacatctgactctttgctagtcttacctgtacttatatattccggagccatatagcctaaggttccggcaaccactgttgtt |
28264517 |
T |
|
| Q |
109 |
tggggtccaatctcatggtccattagtttagccaacccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctc |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
28264518 |
tggggtccaatctcatggtccattagcttagccaacccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttaatatccc |
28264617 |
T |
|
| Q |
209 |
tatgaaccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagaggtgtcct |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||| |||||||| || |||||| |||||| |||||||||||| |
|
|
| T |
28264618 |
tatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagaggtgtcct |
28264717 |
T |
|
| Q |
309 |
ttttccgaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttctcatggcaccaacctaagagcttcacaaga |
408 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||| |
|
|
| T |
28264718 |
tttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttatcatggcaccatcccagaagcttcacaaga |
28264817 |
T |
|
| Q |
409 |
ttccgatgtctcagctggctaataactttcacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaat |
508 |
Q |
| |
|
|| | ||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
28264818 |
tttctatgtctcagttgactaataactttaacttcagttacatactctttctttccttgtcttgaccctctggatattttcttcacagcaacttgtaaat |
28264917 |
T |
|
| Q |
509 |
cttgatcaaaaaagtaacctttataaactgctcc-aaaccaccttgacc |
556 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
28264918 |
ctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacc |
28264966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 556
Target Start/End: Original strand, 28294239 - 28294781
Alignment:
| Q |
15 |
cccaaaactataaacatctgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtttggggt |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||| ||||||| || | |||||| ||||| | |||||| || |||||||| | | | |||||||| || |
|
|
| T |
28294239 |
cccaaaactatacacatctgactctttacttgccctacctgtgctcacatattccggagctagatagccaaatgttccggccagcccagttgtttgcggc |
28294338 |
T |
|
| Q |
115 |
ccaatctcatggtccattagtttagccaacccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctctatgaa |
214 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || | |||||||||||||||||| ||||| ||||||| |
|
|
| T |
28294339 |
ccaagttcatggtccattaacttagccaacccaaaatcaccaagcttgacattgaaacttgagtctaacataacattacttgatttaatatccctatgaa |
28294438 |
T |
|
| Q |
215 |
ccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagaggtgtcctttttcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| || |
|
|
| T |
28294439 |
ccacacacctctcccattcttcatgtagataaagcaaaccagaagccaatccaagagctattttgtgccttacaccccaagaaagaggtgttcttttacc |
28294538 |
T |
|
| Q |
315 |
gaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttctcatggcaccaacctaagagcttcacaagattccga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| | |
|
|
| T |
28294539 |
aaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccaacccaaaagcttcacaagattccta |
28294638 |
T |
|
| Q |
415 |
tgtctcagctggctaataactttcacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaatcttgat |
514 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| || |
|
|
| T |
28294639 |
tgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaat |
28294738 |
T |
|
| Q |
515 |
caaaaaagtaacctttataaactgctcc-aaaccaccttgacc |
556 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
28294739 |
cagcaaagtaacctttataaacagctccaaaaccaccttgacc |
28294781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 556
Target Start/End: Original strand, 28304441 - 28304983
Alignment:
| Q |
15 |
cccaaaactataaacatctgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtttggggt |
114 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| | |||||||| | |||||| ||||| | |||||| || |||||||| | | | || ||||| || |
|
|
| T |
28304441 |
cccaaaactataaacatctgactctttactcgcccttcctgtactcacatattctggagctagatagccgaatgttccggccagccccgtcgtttgaggc |
28304540 |
T |
|
| Q |
115 |
ccaatctcatggtccattagtttagccaacccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctctatgaa |
214 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | |
|
|
| T |
28304541 |
ccaagttcatggtccattaatttagccaacccaaaatcaccaagcttaacattaaaacttgaatctagcataacattacttgatttaatatccctatgta |
28304640 |
T |
|
| Q |
215 |
ccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagaggtgtcctttttcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||| | ||||||||||||| |||||| || ||||||| ||||||||||||||| ||||| || |
|
|
| T |
28304641 |
ccacacacctctcccattcttcatgtagatacagcaaaccagaggccaatccaagagttattttgtgccttacaccccaagaaagaggtgttcttttacc |
28304740 |
T |
|
| Q |
315 |
gaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttctcatggcaccaacctaagagcttcacaagattccga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |
|
|
| T |
28304741 |
aaataaatgagaatcaagactaccatttggcatgaactcataaataagtagaaactcacctttgtcatggcaccagcctaagagcttcacaagattccta |
28304840 |
T |
|
| Q |
415 |
tgtctcagctggctaataactttcacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaatcttgat |
514 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
28304841 |
tgtctcagttgactaataactttaacttcagttacatactctttctttccttgtcttgaccctctggatattttcttcacagcaacttgtaaatctaaat |
28304940 |
T |
|
| Q |
515 |
caaaaaagtaacctttataaactgctcc-aaaccaccttgacc |
556 |
Q |
| |
|
|| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
28304941 |
cagcaaagtaacctttaaaaactgctccaaaaccaccttgacc |
28304983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 556
Target Start/End: Complemental strand, 28279452 - 28278905
Alignment:
| Q |
10 |
acaaccccaaaactataaacatctgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgttt |
109 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
28279452 |
acaaccccaaagctatagacatcagattctttgctagccttacctgtacttatatattctggagccaaatatcctaaggttccagcaatcactgttgttt |
28279353 |
T |
|
| Q |
110 |
ggggtccaatctcatggtccattagtttagccaacccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctct |
209 |
Q |
| |
|
| || |||| ||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||| || |
|
|
| T |
28279352 |
gaggcccaagctcatggtctattaatttagccaacccaaaatcaccaagcttgacattgaaactagaatctaacataacattacttgatttaatatccct |
28279253 |
T |
|
| Q |
210 |
atgaaccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagaggtgtcctt |
309 |
Q |
| |
|
||| |||||||| | |||||||||||||||| |||||| || ||| | |||||| |||| |||||||| || |||| |||||||||||||||| | ||| |
|
|
| T |
28279252 |
atgtaccacacatttttcccattcttcatgtaaataaagcacaccagatgccaattcaagtgctattttgtgccttagactccaagaaagaggtattctt |
28279153 |
T |
|
| Q |
310 |
tttccgaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttctcatggcaccaacctaagagcttcacaagat |
409 |
Q |
| |
|
|| || |||||||||||||| || ||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
28279152 |
ttaccaaataaatgagaatccaggctaccgttaggcataaactcataaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagat |
28279053 |
T |
|
| Q |
410 |
tccgatgtctcagctggctaataactttcacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaatc |
509 |
Q |
| |
|
|||| ||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| || || | |||||||||||||||||||| | |||||| |
|
|
| T |
28279052 |
tccggtgtctcaatgggctaatgactttaacttcagtaacatactctttcttcccttgtctagatcccttcgatattttcttcacagcaaccggtaaatc |
28278953 |
T |
|
| Q |
510 |
ttgatcaaaaaagtaacctttataaactgctccaaa-ccaccttgacc |
556 |
Q |
| |
|
| |||||||||||| ||||||||| || |||||||| ||||||||||| |
|
|
| T |
28278952 |
tggatcaaaaaagttacctttatatacagctccaaacccaccttgacc |
28278905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 28342037 - 28342119
Alignment:
| Q |
316 |
aataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttctcatggcaccaacctaagag |
398 |
Q |
| |
|
|||| |||| |||||||||| ||||| |||||| | ||||||||||||| || ||||| ||| ||||| |||||||||||||| |
|
|
| T |
28342037 |
aatagatgataatcaagacttccattaggcatgtattcataaacaagtaaaagctcacttttttcatgacaccaacctaagag |
28342119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 43363761 - 43363692
Alignment:
| Q |
145 |
ccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctctatgaa |
214 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||| | |||||||||||||||||| ||||| ||||||| |
|
|
| T |
43363761 |
ccaaagtcaccaagcttagcattgaaatttgaatacaacataacattacttgattttatatccctatgaa |
43363692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 17124402 - 17124362
Alignment:
| Q |
174 |
agaatcaagcataacattacttgatttgatatctctatgaa |
214 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
17124402 |
agaatcaagcataacattacttgttttaacatctctatgaa |
17124362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 47871699 - 47871591
Alignment:
| Q |
137 |
tagccaacccaaagtcaccaagcttaacattgaaactagaatcaagcataacattacttgatttgatatctctatgaaccacacacctctcccattcttc |
236 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| || | ||||| || || ||||| || |||||||||| |||||| ||||||||||| |
|
|
| T |
47871699 |
tagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttc |
47871600 |
T |
|
| Q |
237 |
atgtagata |
245 |
Q |
| |
|
||| ||||| |
|
|
| T |
47871599 |
atgaagata |
47871591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 1225145 - 1225101
Alignment:
| Q |
337 |
ccatttggcatgaactcataaacaagtagaaactcacctttctca |
381 |
Q |
| |
|
||||| |||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1225145 |
ccattaggcatgaaatcataaacaagaagcaactcacctttctca |
1225101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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