View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378R-Insertion-6 (Length: 491)
Name: NF3378R-Insertion-6
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 125 - 459
Target Start/End: Complemental strand, 49254965 - 49254615
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
224 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
|
| Q |
225 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttga-aaaatacacgccatgttatgcttcttgaac---c |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagc |
49254766 |
T |
|
| Q |
321 |
accctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgtt |
407 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
49254765 |
accctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgtt |
49254667 |
T |
|
| Q |
408 |
ggtggaagttgagattattattgaaattggaataaacratgttcasttcaca |
459 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
49254666 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
49254615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 125 - 366
Target Start/End: Complemental strand, 49267227 - 49266985
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
224 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
|
| Q |
225 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttg-aaaaatacacgccatgttatgcttcttgaaccacc |
323 |
Q |
| |
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|||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
|
| Q |
324 |
ctctgtgtctttctctaacaaacctttatccatattttctagc |
366 |
Q |
| |
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||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
49267027 |
ttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
95 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
|
| Q |
191 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 125 - 310
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
224 |
Q |
| |
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||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
|
| Q |
225 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaa-aaatacacgccatgttatgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 49256012 - 49255932
Alignment:
| Q |
8 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
88 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256012 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
49255932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 49268982 - 49268906
Alignment:
| Q |
8 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaa |
84 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||||| |
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| T |
49268982 |
aagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaaa |
49268906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 49273738 - 49273704
Alignment:
| Q |
51 |
taggagctcaaatgaccaccactcaaagctgaaat |
85 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaaat |
49273704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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