View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378R-Insertion-8 (Length: 396)
Name: NF3378R-Insertion-8
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 69 - 307
Target Start/End: Complemental strand, 53175081 - 53174843
Alignment:
| Q |
69 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaagaacttcaaag |
168 |
Q |
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| T |
53175081 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaagagcttcaaag |
53174982 |
T |
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| Q |
169 |
gatgaaagaaaagagaaagagtttttgacagagattggaacaattggtcatgttcgtcattccaatgttttatctcttctaggatgttgtattgacaatg |
268 |
Q |
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| T |
53174981 |
gatgaaagaaaagagaaagagtttttgacagagattggaacaattggtcatgttcgtcattccaatgttttatctcttctaggatgttgtattgacaatg |
53174882 |
T |
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| Q |
269 |
gactttactttgtttttgaactatccaccacaggttctg |
307 |
Q |
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| T |
53174881 |
gactttactttgtttttgaactatccaccactggttctg |
53174843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 53175148 - 53175112
Alignment:
| Q |
9 |
catagtataatattcatgaaatttttgggaataaaag |
45 |
Q |
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| T |
53175148 |
catagtataatattcatgaaatttttgggaataaaag |
53175112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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