View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378R-Insertion-9 (Length: 343)
Name: NF3378R-Insertion-9
Description: NF3378R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378R-Insertion-9 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 30208935 - 30208604
Alignment:
| Q |
9 |
agctgctccggatgaagcttctgttgatgctgccgctcctccggcaaagaaacgtggcagaaagagaaaaacggggaaggaagccgaaacaggcgaaatc |
108 |
Q |
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| T |
30208935 |
agctgctcctgatgaagcttctgttgatgctgccgctcctccggcaaagaaacgtggcagaaagagaaaaacggagaaggaagccgaaacaggcgaaatc |
30208836 |
T |
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| Q |
109 |
gtgagaagaagtgagcgcgccaagaagagtagcagatcattgaacgaggattacttgtcagatgtagaggaggagctggaagttaagaagatcaggggga |
208 |
Q |
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| T |
30208835 |
gtgagaagaagtgagcgtgccaagaagagtagcagatcattgaacgaggattacttgttagatgtagaggaggagctggaagttaagaagattaagggga |
30208736 |
T |
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| Q |
209 |
aacgtggtaggaagaagaaggtggcaaccggtgttggtgttactgatgaaatcaatgctgctcaggaggaggagaattctgaatgcattgaacagcaaca |
308 |
Q |
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| T |
30208735 |
aacgtggtaggaagaagaaggtggcaaccggtgttggtgttactgatgaaatcaatgctgctcaggagggggagaatcctgaatgcattgaacagcaaca |
30208636 |
T |
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| Q |
309 |
gatggtaacatcatatgatcttcttgttaatt |
340 |
Q |
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| T |
30208635 |
gatggtaacatcatatgatctttttgttaatt |
30208604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 411099 - 410994
Alignment:
| Q |
94 |
gaaacaggcgaaatcgtgagaagaagtgagcgcgccaagaagagtagcagatcattgaacgaggattacttgtcagatgtagaggaggagctggaagtta |
193 |
Q |
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| T |
411099 |
gaaacaggcgaaggtgtgagaaagagtgaacgccccaagaagagtagtagatcattgaaggatgattacatgtcagatgtggaggaggaagtggaagtga |
411000 |
T |
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| Q |
194 |
agaaga |
199 |
Q |
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|||||| |
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| T |
410999 |
agaaga |
410994 |
T |
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