View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3378_high_7 (Length: 326)
Name: NF3378_high_7
Description: NF3378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 5297796 - 5297502
Alignment:
| Q |
24 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297796 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
5297697 |
T |
|
| Q |
124 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297696 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
5297597 |
T |
|
| Q |
224 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297596 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
5297502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 54721643 - 54721349
Alignment:
| Q |
24 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721643 |
atcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgt |
54721544 |
T |
|
| Q |
124 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721543 |
tagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttatt |
54721444 |
T |
|
| Q |
224 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721443 |
atagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcat |
54721349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 54714664 - 54714572
Alignment:
| Q |
59 |
atagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatgga |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54714664 |
atagatagatataaataacacacaaaccatggccgcaatctctgatcatggaaggatttcagcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
72 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University