View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378_high_9 (Length: 313)
Name: NF3378_high_9
Description: NF3378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 61 - 296
Target Start/End: Original strand, 34891660 - 34891895
Alignment:
| Q |
61 |
tttagttcttcatggcaagtttcaatgttgcagttcagtggtaatggaatttgccttgattttaagagcgacttttctaattttaagttaacttctttaa |
160 |
Q |
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| T |
34891660 |
tttagttcttcatggcaagtttcaatgttgcagttcagtggtaatggaatttgccttgattttaagagcgacttttctaattttaagttaacttctttaa |
34891759 |
T |
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| Q |
161 |
atgacagtttgaaaaaaggcaattgattccactagaagtaatgtagctgccacagtactgaagggagtcaaacaaaacatgagtgatctctgctaaatgt |
260 |
Q |
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| T |
34891760 |
atgacagtttgaaaaaaggcaattgattccactagaagtaatgtagctgccacagtactgaagggagtcaagcaaaacatgagtgatctctgctaaatgt |
34891859 |
T |
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| Q |
261 |
attttagaagtcaaacaaagaaatgatgatgtccat |
296 |
Q |
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| T |
34891860 |
attttagaagtcaaacaaagaaatgaagatgtccat |
34891895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34899975 - 34899905
Alignment:
| Q |
1 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttc |
71 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttc |
34899905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 34891908 - 34891959
Alignment:
| Q |
235 |
aaacatgagtgatctctgctaaatgtattttagaagtcaaacaaagaaatga |
286 |
Q |
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| T |
34891908 |
aaacatgagtgatatctgctaaacgtactttagaagtcaaacaaagaaatga |
34891959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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