View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3378_low_1 (Length: 360)
Name: NF3378_low_1
Description: NF3378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3378_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 7377093 - 7376806
Alignment:
| Q |
13 |
agaaacctcatgtgtgtatgatgttgtaaaccttcagtgaccattagtactgat-----gatccaactaccatccccttttctaaccagacgaccaaagt |
107 |
Q |
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| T |
7377093 |
agaaacctcatgtgtgtatgatgttgtaaaccttcagtgaccattagtactgatctgatgatccaactaccatccccttttctaaccagacgaccaaaat |
7376994 |
T |
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| Q |
108 |
ctattcgaatcgtcatgacaacaaccatcggccttcaaaataaaaccatccagacaaaagggtaccaggaaatccatccagaaggattattggcatgggc |
207 |
Q |
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| T |
7376993 |
ctattcgaatcgtcatgacaacaaccatcggccttcaaaataaaaccatccagacaaaagggtaccaggaaatccatccagaaggattattggcatgggc |
7376894 |
T |
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| Q |
208 |
tataaatnnnnnnnnnnnnnctaggggaacataaatataaactatgtagaagtaaagatacatgaaattttataaaagttttattttt |
295 |
Q |
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| T |
7376893 |
tataaataaaaaacaaaaaactaggggaacataaatataaactatgtagaagaaaagatacatgaaattttattaaagttttattttt |
7376806 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 26380998 - 26381052
Alignment:
| Q |
279 |
ataaaagttttatttttcaagagaatggcatgaaaaaggggtgcaaaaattcatt |
333 |
Q |
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| T |
26380998 |
ataatagttttatctttcaagagaatgacatgaaaaatgagtgcaataattcatt |
26381052 |
T |
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