View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-11 (Length: 286)
Name: NF3379-Insertion-11
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 42969332 - 42969610
Alignment:
| Q |
8 |
gtaattgcatgcagttggtggcttacaacatcctgactacattaaccataacttagcattaatcaatttcacattcaaaaaatgttattttgtaactttg |
107 |
Q |
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| T |
42969332 |
gtaattgcatgcagttggtggcttacaacatcctgactacattaaccataacttagcattaatcaatttcacattcaaaaaatgttattttgtaacttta |
42969431 |
T |
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| Q |
108 |
gtagtagtaatatatttattgaaaattgagctagtaacttaaactaattataatttgtacctgtattggagacatatcattctgcatataatccaagggg |
207 |
Q |
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| T |
42969432 |
gtagtagtaatatatttattgaaaattgagctagtaacttaaactaattataatttgtacctgtattggagacatatcattctgcatgtaatccaaaggg |
42969531 |
T |
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| Q |
208 |
gtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctttatagtattccaataacgaggatcttgta |
286 |
Q |
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| T |
42969532 |
gtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctttatagtattccaataacgaggatcttgta |
42969610 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 10679138 - 10679245
Alignment:
| Q |
165 |
tacctgtattggagacatatcattctgcatataatccaagggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctttatagta |
264 |
Q |
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| T |
10679138 |
tacctgaattggagacaaatccctttgcatataatcaagagaggtccaagaagcaagttttgaacaagtattagaccccataatacaactcttaatagta |
10679237 |
T |
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| Q |
265 |
ttccaata |
272 |
Q |
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| T |
10679238 |
ctccaata |
10679245 |
T |
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