View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379-Insertion-12 (Length: 228)

Name: NF3379-Insertion-12
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379-Insertion-12
NF3379-Insertion-12
[»] chr2 (11 HSPs)
chr2 (8-228)||(11110032-11110252)
chr2 (57-228)||(11118085-11118256)
chr2 (69-228)||(11145244-11145403)
chr2 (60-228)||(11136936-11137104)
chr2 (54-228)||(10794035-10794209)
chr2 (69-228)||(11149178-11149337)
chr2 (77-169)||(11200121-11200213)
chr2 (70-186)||(11104099-11104215)
chr2 (70-228)||(11155562-11155720)
chr2 (70-186)||(11095640-11095756)
chr2 (72-183)||(11191956-11192067)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 11110032 - 11110252
Alignment:
Q  8 atatgtatatatgtagtttttgagatagagcactaaataacttgatattatttatgattcaaacagggttgtgatgcatcagttttgttgaataacaccg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11110032 atatgtatatatgtagtttttgagatagagcactaaataacttgatattatttatgattgaaacagggttgtgatgcatcagttttgttgaataacaccg 11110131  T
Q  108 caactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110132 caactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccc 11110231  T
Q  208 taatagagtttcttgtgctga 228  Q
    |||||||||||||||||||||    
T  11110232 taatagagtttcttgtgctga 11110252  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 11118085 - 11118256
Alignment:
Q  57 atttatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaag 156  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||||||  ||||||||| |||||||||||    
T  11118085 atttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaag 11118184  T
Q  157 aggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctga 228  Q
    | ||||||||||||||||||| || || ||| | |||||||||| ||| ||||||| |||||||||||||||    
T  11118185 aagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctga 11118256  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 11145244 - 11145403
Alignment:
Q  69 aacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgt 168  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |  ||||| || ||||| ||||||||    
T  11145244 aacagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgt 11145343  T
Q  169 tatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctga 228  Q
    | | ||||||||||| ||   ||| ||||| ||||||||||| | |||||||||||||||    
T  11145344 tgtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctga 11145403  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 11136936 - 11137104
Alignment:
Q  60 tatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagagg 159  Q
    |||||||  ||||||||||||||||||||||||| ||||| || || |  || ||||||||||||||||| ||||| ||||||||||||||  || ||||    
T  11136936 tatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgagg 11137035  T
Q  160 attggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctga 228  Q
     ||||||||| | ||||||||||| ||   ||||||||| ||||| ||||| | |||||||||||||||    
T  11137036 tttggatgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctga 11137104  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 10794209 - 10794035
Alignment:
Q  54 attatttatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactcctt 153  Q
    |||||| || ||| ||||||||||| ||||||||  ||||| |||| ||||| || ||||| ||||| |||| | | ||| | ||||||||||||||| |    
T  10794209 attattaattattgaaacagggttgcgatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccat 10794110  T
Q  154 aagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctga 228  Q
    |||||| ||| | ||| | ||||  ||||||||  | |||||||||||||||||||||| |||||||||||||||    
T  10794109 aagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctga 10794035  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 11149178 - 11149337
Alignment:
Q  69 aacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgt 168  Q
    |||||||||||||||||||||||||  |||| || || |  ||  |||||||||||||||||||||||||||| |  ||||| |||||||| || |||||    
T  11149178 aacagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgt 11149277  T
Q  169 tatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctga 228  Q
    | | ||||||||||| ||    |||||||| ||||| ||||| | ||||||||| |||||    
T  11149278 tgtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctga 11149337  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 11200121 - 11200213
Alignment:
Q  77 tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 169  Q
    ||||||||||| |||||| |||| ||||| ||||| || || || |||||| | ||||||||||||||||||||| ||||||| |||||||||    
T  11200121 tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgtt 11200213  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 11104099 - 11104215
Alignment:
Q  70 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 169  Q
    |||||| ||||||| ||||||||||||||| ||||| |  || |||||||||||||||||||| |||||||| |  ||||| ||||   | |||||||||    
T  11104099 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgtt 11104198  T
Q  170 atcaatcaaatcaagac 186  Q
     | ||| ||||||||||    
T  11104199 gtgaataaaatcaagac 11104215  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 11155562 - 11155720
Alignment:
Q  70 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 169  Q
    |||||| |||||||| || ||||||||||| || || || || || || || |||||| | ||||||||||||| |||||| |||||||| |||||||||    
T  11155562 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 11155661  T
Q  170 atcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctga 228  Q
     | ||||| ||||| |||    | ||||  ||||| ||||| | |||||||||||||||    
T  11155662 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctga 11155720  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 11095640 - 11095756
Alignment:
Q  70 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 169  Q
    |||||||||||||| ||||||||||||||| |||||    || || || ||||| ||||||||  ||||||| || ||||| ||||| || |||||||||    
T  11095640 acagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttggatgtt 11095739  T
Q  170 atcaatcaaatcaagac 186  Q
     | || |||||||||||    
T  11095740 gtaaaccaaatcaagac 11095756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 11192067 - 11191956
Alignment:
Q  72 agggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttat 171  Q
    ||||||||||||||||| | ||||||||| || | |  ||||| |||||||| ||||  ||||| |||||||  |||||  ||||||| |||||| || |    
T  11192067 agggttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt 11191968  T
Q  172 caatcaaatcaa 183  Q
     |||||||||||    
T  11191967 gaatcaaatcaa 11191956  T

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