View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379-Insertion-16 (Length: 871)

Name: NF3379-Insertion-16
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379-Insertion-16
NF3379-Insertion-16
[»] chr4 (11 HSPs)
chr4 (8-871)||(16854662-16855526)
chr4 (759-871)||(17523603-17523715)
chr4 (579-663)||(17520288-17520372)
chr4 (165-228)||(54164658-54164721)
chr4 (150-228)||(17430714-17430792)
chr4 (674-707)||(17520453-17520486)
chr4 (132-228)||(13552821-13552917)
chr4 (109-228)||(28687597-28687715)
chr4 (177-228)||(54164467-54164518)
chr4 (169-227)||(32185283-32185341)
chr4 (118-187)||(30941376-30941445)
[»] chr6 (7 HSPs)
chr6 (121-228)||(12289981-12290088)
chr6 (164-228)||(34637615-34637679)
chr6 (165-231)||(7359611-7359677)
chr6 (118-195)||(19045035-19045112)
chr6 (159-227)||(13340445-13340513)
chr6 (164-228)||(34637426-34637489)
chr6 (114-228)||(31298865-31298979)
[»] chr2 (12 HSPs)
chr2 (109-228)||(37897576-37897695)
chr2 (153-228)||(25330561-25330636)
chr2 (115-228)||(18509498-18509611)
chr2 (159-234)||(16192599-16192674)
chr2 (119-226)||(27847860-27847967)
chr2 (109-226)||(981053-981169)
chr2 (109-228)||(12874681-12874800)
chr2 (109-227)||(12874816-12874934)
chr2 (119-228)||(4921309-4921418)
chr2 (115-227)||(16127920-16128032)
chr2 (114-228)||(980920-981032)
chr2 (150-228)||(32945613-32945691)
[»] chr5 (8 HSPs)
chr5 (109-228)||(2344600-2344719)
chr5 (118-227)||(22297764-22297873)
chr5 (177-228)||(2846574-2846625)
chr5 (177-228)||(2858411-2858462)
chr5 (159-238)||(25906143-25906222)
chr5 (118-228)||(29673292-29673401)
chr5 (164-231)||(2344504-2344570)
chr5 (121-228)||(6843083-6843190)
[»] chr7 (11 HSPs)
chr7 (109-227)||(23797180-23797298)
chr7 (118-226)||(7760742-7760850)
chr7 (118-228)||(29635236-29635345)
chr7 (150-227)||(20165018-20165095)
chr7 (152-228)||(37081273-37081348)
chr7 (154-228)||(3555366-3555440)
chr7 (177-227)||(6036550-6036600)
chr7 (132-226)||(31198302-31198395)
chr7 (132-228)||(9686444-9686540)
chr7 (177-228)||(19105458-19105509)
chr7 (105-228)||(31198430-31198552)
[»] chr3 (8 HSPs)
chr3 (115-228)||(30172072-30172184)
chr3 (152-228)||(4304326-4304402)
chr3 (159-234)||(30430265-30430340)
chr3 (121-228)||(32618934-32619041)
chr3 (159-227)||(2928096-2928164)
chr3 (118-226)||(4475108-4475215)
chr3 (150-228)||(6931117-6931195)
chr3 (118-228)||(25799073-25799183)
[»] chr1 (13 HSPs)
chr1 (118-228)||(30746906-30747015)
chr1 (118-228)||(30768357-30768466)
chr1 (109-234)||(16706330-16706455)
chr1 (121-228)||(30749088-30749195)
chr1 (121-228)||(30770539-30770646)
chr1 (109-228)||(16706471-16706593)
chr1 (118-224)||(13765561-13765667)
chr1 (109-234)||(22679332-22679457)
chr1 (118-227)||(22679471-22679580)
chr1 (159-227)||(23528234-23528302)
chr1 (8-47)||(13774330-13774369)
chr1 (118-228)||(30748952-30749062)
chr1 (118-228)||(30770403-30770513)
[»] chr8 (11 HSPs)
chr8 (132-228)||(31212443-31212539)
chr8 (109-228)||(9861569-9861688)
chr8 (118-228)||(6906265-6906374)
chr8 (118-228)||(14148397-14148506)
chr8 (118-228)||(33892037-33892147)
chr8 (118-227)||(6906418-6906527)
chr8 (159-228)||(31212314-31212383)
chr8 (160-228)||(5879876-5879944)
chr8 (121-228)||(29242820-29242926)
chr8 (109-228)||(33892172-33892291)
chr8 (153-226)||(5880043-5880116)


Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 8 - 871
Target Start/End: Original strand, 16854662 - 16855526
Alignment:
Q  8 cttctgatctcacatctctcgttcaagctcaggtaattcagccctaaaatttaagactatggagtgtatataagtatttaccttactttaaacaataaat 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16854662 cttctgatctcacatctcttgttcaagctcaggtaattcagccctaaaatttaagactatggagtgtatataagtatttaccttactttaaacaataaat 16854761  T
Q  108 atagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttaggg 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  16854762 atagatcagagactaattttatggatgaaaatttttaaaggaatcaaaaaactaaggaatattttagacggactaaaatttaatgttgatctatttagga 16854861  T
Q  208 cgactatttacttatttaaccatagaataaatgcaacctgttggttttggttatttaaccattgaataaatttttagttattgtttaccaacacatttaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16854862 cgactatttacttatttaaccatagaataaatgcaacctgttggttttggttatttaaccattgaataaatttttagttattgtttaccaacacatttga 16854961  T
Q  308 atgtataaatcgaaatgcaattatgttgaataaatttttagttcttgcttatctagcttaaannnnnnnactagttactataaggagtgggtgtttannn 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||       
T  16854962 atgtataaatcgaaatgcaattatgttgaataaatttttagttcttgcttatctagcttaaatttttttactagttactataaggagtgggtgtttattt 16855061  T
Q  408 nnnnnncgcattaatgaaggtacctttagtttacgtgttcaaacaatttgaatgacatcctcttcaacaattatatgacgattttcttgaattctttttc 507  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16855062 ttttttcgcattaatgaaggtacctttagtttacgtgttcaaacaatttgaatgacatcctcttcaacaattatatgacgattttcttgaattctttttc 16855161  T
Q  508 cttgccctaaattgccatttggtaataacaatttagacaaatatccacagattcatctttttgcnnnnnnntctagctaaccatttcaaatgaagttctc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  16855162 cttgccctaaattgccatttggtaataacaatttagacaaatatccacagattcatctttttgcaaaaaaatctagctaaccatttcaaatgaagttctc 16855261  T
Q  608 ttccgacaatattttctccatttataaaatttgaacatgagactttacttaaaatatcttactgttatttggcttctattgggcatgagaatattataaa 707  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16855262 ttccgaccatattttctccatttataaaatttgaacatgagactttacttaaaatatcttactgttatttggcttctattgggcatgaggatattataaa 16855361  T
Q  708 tgatagtaatcattaatgaaattttagagttaatttcatattaataaaactttttgatcatattcaccagttgggtcaacagatgataccttttcaaaga 807  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  16855362 tgatagtaatcattaatgaaattttagagttaacttcatattaataaaactttttgatcttattcaccagttgggtccacagatgatgccttttcaaaga 16855461  T
Q  808 agataaaatcattcttagacttttagatgaaccacacaaca-aatatcaaaccaacaacaaacct 871  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16855462 agataaaatcattcttagacttttagatgaaccacacaacagaatatcaaaccaacaacaaacct 16855526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 759 - 871
Target Start/End: Original strand, 17523603 - 17523715
Alignment:
Q  759 ttttgatcatattcaccagttgggtcaacagatgataccttttcaaagaagataaaatcattcttagacttttagatgaaccacacaac-aaatatcaaa 857  Q
    |||||||| |||||||| ||||| || ||| |||||||| ||||| |||||||||||||||||||| | ||||||||| |||||||||| ||||||||||    
T  17523603 ttttgatcttattcacctgttgg-tccacaaatgataccctttcagagaagataaaatcattcttaaatttttagatggaccacacaacaaaatatcaaa 17523701  T
Q  858 ccaacaacaaacct 871  Q
    ||||||||||||||    
T  17523702 ccaacaacaaacct 17523715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 579 - 663
Target Start/End: Original strand, 17520288 - 17520372
Alignment:
Q  579 tctagctaaccatttcaaatgaagttctcttccgacaatattttctccatttataaaatttgaacatgagactttacttaaaata 663  Q
    ||||||||||| | ||||||||||||| ||| |||| |||||||||||||| || ||||||||||||||||||||||||| ||||    
T  17520288 tctagctaaccttctcaaatgaagttcactttcgaccatattttctccattcattaaatttgaacatgagactttacttataata 17520372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 54164658 - 54164721
Alignment:
Q  165 aatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||||| |  |||||||||| ||||||| | ||||||||| ||||||||||||||||||||    
T  54164658 aatattttatagagactaaaatcaaatgttggtatatttagggagactatttacttatttaacc 54164721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 17430792 - 17430714
Alignment:
Q  150 atcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||||  ||||||||||||||||| ||||||||||| ||||||| | ||||||| | ||| ||||| ||| ||||||    
T  17430792 atcaaaagcctaaggaatattttagagggactaaaatcaaatgttggtatatttagagggacaatttatttacttaacc 17430714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 707
Target Start/End: Original strand, 17520453 - 17520486
Alignment:
Q  674 atttggcttctattgggcatgagaatattataaa 707  Q
    ||||||||||||||||||||||||||||||||||    
T  17520453 atttggcttctattgggcatgagaatattataaa 17520486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 13552821 - 13552917
Alignment:
Q  132 atgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||| ||||| ||| | |||||  ||||  |||||||||   ||||||||||| ||| ||||| ||||||||  ||||||||||||||||||||    
T  13552821 atgaaaaattttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 13552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 28687597 - 28687715
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||| |||||||||||| |||||||| ||||| | | | |||||  ||||  |||||||||||   ||||||||| ||||||||| ||||||  |     
T  28687597 tagagcagggactaattttattgatgaaaaattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaaag- 28687695  T
Q  209 gactatttacttatttaacc 228  Q
     |||||||||||||||||||    
T  28687696 aactatttacttatttaacc 28687715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 54164518 - 54164467
Alignment:
Q  177 ggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||||||| ||||||| | |||||||  |||||||||||||||||||||    
T  54164518 ggactaaaatcaaatgttggtatatttagaacgactatttacttatttaacc 54164467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 32185341 - 32185283
Alignment:
Q  169 ttttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaac 227  Q
    ||||||| ||||||||||| ||||||| | ||||||| | ||||||||||| |||||||    
T  32185341 ttttagagggactaaaatcaaatgttggtatatttagagggactatttactcatttaac 32185283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 30941445 - 30941376
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatc 187  Q
    |||||||||||| ||| ||| |||||| | | ||||||| ||||||||||||| ||||  ||||||||||    
T  30941445 gactaattttatagataaaagtttttagatggatcaaaagactaaggaatattctagaaagactaaaatc 30941376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 12290088 - 12289981
Alignment:
Q  121 taattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttactt 220  Q
    |||||| |||||||||||||||| || | |||||||| ||| |||||||||||| | | |||||||| ||||||| | ||||||||| ||||||||||||    
T  12290088 taatttcatggatgaaaatttttgaagggatcaaaaacctagggaatattttaggcaggctaaaatcaaatgttggtatatttagggagactatttactt 12289989  T
Q  221 atttaacc 228  Q
    ||||||||    
T  12289988 atttaacc 12289981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 34637615 - 34637679
Alignment:
Q  164 gaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||||||||  | ||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  34637615 gaatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttacttatttaacc 34637679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 7359611 - 7359677
Alignment:
Q  165 aatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaaccata 231  Q
    ||||||||||  ||| ||||||| ||||||| | ||||||||||||| | |||||||||||||||||    
T  7359611 aatattttagggggagtaaaatcaaatgttggtatatttagggcgacgagttacttatttaaccata 7359677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 19045035 - 19045112
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttg 195  Q
    |||||||||||||||||||| |||||  | | ||| ||||  |||| ||||||||||| ||||||||||| |||||||    
T  19045035 gactaattttatggatgaaatttttttgaggtatcgaaaacataagaaatattttagaaggactaaaatcaaatgttg 19045112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 13340513 - 13340445
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaac 227  Q
    |||| |||| ||||| | ||||||||||| ||||||| | |||||| || |||||||||||||||||||    
T  13340513 ctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 34637489 - 34637426
Alignment:
Q  164 gaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||||||||  ||||||||||| ||||||| | |||||| || ||||||||||||||||||||    
T  34637489 gaatattttagg-ggactaaaatcaaatgttggtatatttatggagactatttacttatttaacc 34637426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 31298865 - 31298979
Alignment:
Q  114 cagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgacta 213  Q
    |||||||||||||  | ||||||||  |||| | | | |||||  |||| |||||||||||| | ||||||||| ||| ||| | ||||||  | |||||    
T  31298865 cagagactaatttcgtagatgaaaaaatttagagggagcaaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggacta 31298964  T
Q  214 tttacttatttaacc 228  Q
    |||||||||||||||    
T  31298965 tttacttatttaacc 31298979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 37897695 - 37897576
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||||||||||||| ||||||||||||||||| | | | | |||| ||||||||||||||||| ||| ||||||| ||||||| ||||||||||      
T  37897695 tagagcagagactaatttcatggatgaaaatttttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttggtctatttaggag 37897596  T
Q  209 gactatttacttatttaacc 228  Q
    | |||||| |||||||||||    
T  37897595 ggctatttccttatttaacc 37897576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 25330636 - 25330561
Alignment:
Q  153 aaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||| |||| ||| |||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  25330636 aaaaatctaaagaaaattttagagggactaaaatcaaatgttgatgtatttagggggactatttacttatttaacc 25330561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 18509611 - 18509498
Alignment:
Q  115 agagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactat 214  Q
    ||||||||||||||  |||| ||| ||||  | | | |||||| | ||||||||||||||| ||||||||||| ||||||| | ||||||||| ||| ||    
T  18509611 agagactaattttacagatggaaaattttggagggaccaaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatatttagggggaccat 18509512  T
Q  215 ttacttatttaacc 228  Q
    ||| ||||||||||    
T  18509511 ttaattatttaacc 18509498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 16192599 - 16192674
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaaccatagaa 234  Q
    ||||||||||||||||   |||||||||| ||||||||| |||||| |  |||||||||||||||||||| |||||    
T  16192599 ctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaaccctagaa 16192674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 27847967 - 27847860
Alignment:
Q  119 actaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttac 218  Q
    |||||||| || |||||| | ||||||| | | ||||||  ||||||||||||||   ||||||||||| ||||||| | |||||| || ||||||||||    
T  27847967 actaatttaatagatgaataattttaaagggaccaaaaacttaaggaatattttaagtggactaaaatcaaatgttggtatatttatggggactatttac 27847868  T
Q  219 ttatttaa 226  Q
    ||||||||    
T  27847867 ttatttaa 27847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 981053 - 981169
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||||||||||||| ||  ||||||| ||||| | | | |||||  |||| |||||||||||  ||||||||||| ||||||| | ||||||| |     
T  981053 tagagcagagactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttagg-ggactaaaatcaaatgttggtatatttagaga 981151  T
Q  209 gactatttacttatttaa 226  Q
    ||||||||||||||||||    
T  981152 gactatttacttatttaa 981169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 12874800 - 12874681
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||||||||||||| || ||||||| |||||| |   | |||||  |||||| |||||||| | |||| |||||| ||||||| | |||||||||     
T  12874800 tagagcagagactaatttcatagatgaaattttttagagagaccaaaagtctaagggatattttaaagggaccaaaatcaaatgttggtatatttaggga 12874701  T
Q  209 gactatttacttatttaacc 228  Q
     || ||||||||||||||||    
T  12874700 aaccatttacttatttaacc 12874681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 12874816 - 12874934
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||| ||||||||| ||  ||||||| ||||| | | | |||||| ||||  ||||||||||| ||||||||||| ||| ||| | ||||| ||      
T  12874816 tagagcagggactaatttcataaatgaaaacttttagagggaccaaaaacctaaataatattttagagggactaaaatcaaatattggtatatttgggaa 12874915  T
Q  209 gactatttacttatttaac 227  Q
    |||||||||||||||||||    
T  12874916 gactatttacttatttaac 12874934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 4921309 - 4921418
Alignment:
Q  119 actaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttac 218  Q
    |||||||| || |||||||||||||| | | |  ||||| ||||  |||||||||   ||| ||||||| ||||||||| ||||||| | |||||||||     
T  4921309 actaatttcatagatgaaaatttttagagggacaaaaaatctaaaaaatattttaaggggattaaaatcaaatgttgatatatttagagagactatttat 4921408  T
Q  219 ttatttaacc 228  Q
    ||||||||||    
T  4921409 ttatttaacc 4921418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 16128032 - 16127920
Alignment:
Q  115 agagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactat 214  Q
    |||||||||||| ||  ||||||| ||||| | | | |||||| |||   ||||||||||  ||||||||||  ||||||| | |||||| || ||||||    
T  16128032 agagactaatttcataaatgaaaaattttagagggaccaaaaacctacataatattttaggaggactaaaattaaatgttggtatatttaaggggactat 16127933  T
Q  215 ttacttatttaac 227  Q
    |||||||||||||    
T  16127932 ttacttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 981032 - 980920
Alignment:
Q  114 cagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgacta 213  Q
    ||||||||||||| || ||| ||||||||| |  | | |||||  ||||| ||||||||||| ||||||||||| ||||||||| ||||||  | ||  |    
T  981032 cagagactaatttcatagat-aaaattttttaggggaccaaaagcctaagaaatattttaga-ggactaaaatcaaatgttgatatatttaaagggatca 980935  T
Q  214 tttacttatttaacc 228  Q
    |||||||||||||||    
T  980934 tttacttatttaacc 980920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 32945691 - 32945613
Alignment:
Q  150 atcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||||| ||||  |||||||||   ||||||||||| ||||||| | ||||| ||| |||||||||| |||||||||    
T  32945691 atcaaaaatctaaataatattttatggggactaaaatcaaatgttggtatattttgggggactatttacctatttaacc 32945613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 2344600 - 2344719
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| |||||| |||||| |||||| |||| ||||||| | | ||||| |||||||||||| ||||| | ||||||||  ||||||| ||||||||||      
T  2344600 tagagcagagattaatttaatggataaaaaattttaaagggaccaaaagactaaggaatatgttagaggaactaaaataaaatgttggtctatttaggag 2344699  T
Q  209 gactatttacttatttaacc 228  Q
    ||||||||||||||||||||    
T  2344700 gactatttacttatttaacc 2344719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 22297873 - 22297764
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| || ||||| || ||||||| | | |||||| ||||  ||||||||||| ||||||||||| ||||||||| ||||||| | |||||||||    
T  22297873 gactaatttcatagatgagaaattttaaagggaccaaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactattta 22297774  T
Q  218 cttatttaac 227  Q
    ||||||||||    
T  22297773 cttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 2846625 - 2846574
Alignment:
Q  177 ggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||    
T  2846625 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2846574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 2858462 - 2858411
Alignment:
Q  177 ggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||    
T  2858462 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 25906143 - 25906222
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaaccatagaataaa 238  Q
    |||| |||||||| ||  ||||||||||| ||||||||| ||||||||  || ||||||||||||||||| || ||||||    
T  25906143 ctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttacttatttaaccctaaaataaa 25906222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 29673401 - 29673292
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    |||||||||||||| ||||| |||||| | | | |||||  ||||  ||||||||||  ||||||||||| ||||||| | |||||| || ||| |||||    
T  29673401 gactaattttatggttgaaattttttagagggaacaaaatcctaaa-aatattttaggaggactaaaatcaaatgttggtatatttaaggggaccattta 29673303  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  29673302 cttatttaacc 29673292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 2344570 - 2344504
Alignment:
Q  164 gaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaaccata 231  Q
    |||||||||| | ||||||||||| |||| |||| |||| |||| |||| ||||||||||||||||||    
T  2344570 gaatatttta-agggactaaaatcaaatgatgatatattaagggggactgtttacttatttaaccata 2344504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 6843190 - 6843083
Alignment:
Q  121 taattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttactt 220  Q
    |||||| || |||||||| ||||| | | | |||||| |||||||||||| |||  ||||||||||| ||||||  | ||||||  | ||||||||| ||    
T  6843190 taatttcatagatgaaaaattttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttgtatatttaaagagactatttattt 6843091  T
Q  221 atttaacc 228  Q
    ||||||||    
T  6843090 atttaacc 6843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 23797180 - 23797298
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||||||| ||||| |||||| |||| ||||| | | | |||||| ||||| ||||||||||| ||||||||||| ||||||||| |||||||||     
T  23797180 tagagcagagaccaatttaatggataaaaagttttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatatatttaggga 23797279  T
Q  209 gactatttacttatttaac 227  Q
     ||||||||| ||||||||    
T  23797280 aactatttacatatttaac 23797298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 7760742 - 7760850
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| ||||||||||||||||  | | | |||||  ||||| ||||||||| | ||||||||||| ||||||| | |||||||||  ||||||||    
T  7760742 gactaatttcatggatgaaaatttttggagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggggaactattta 7760841  T
Q  218 cttatttaa 226  Q
    |||||||||    
T  7760842 cttatttaa 7760850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 29635345 - 29635236
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||  ||| ||||||| ||||| | | | |||||  ||||||||||||||||  ||||||||||| ||||||||| ||||||||| ||| |||||    
T  29635345 gactaattacatgtatgaaaaattttagagggaccaaaagtctaaggaatattttagg-ggactaaaatcaaatgttgatatatttagggggaccattta 29635247  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  29635246 cttatttaacc 29635236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 20165018 - 20165095
Alignment:
Q  150 atcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaac 227  Q
    |||||||| |||| |||||||||||| ||||||||||| ||||||| | ||||||||  ||| |||| ||||||||||    
T  20165018 atcaaaaacctaatgaatattttagagggactaaaatcaaatgttggtatatttaggaagaccatttccttatttaac 20165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 37081273 - 37081348
Alignment:
Q  152 caaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||| |||||||||||||| |  ||||||||||| || |||||| ||||||||| || |||||||||||||||||    
T  37081273 caaaaacctaaggaatatttttgggggactaaaatcaaacgttgatatatttaggg-gaatatttacttatttaacc 37081348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 3555440 - 3555366
Alignment:
Q  154 aaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||| ||||| ||||||||||  ||||||||||| ||||||| | ||||||||| ||| |||| |||||||||||    
T  3555440 aaaacctaagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaacc 3555366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 6036600 - 6036550
Alignment:
Q  177 ggactaaaatctaatgttgatctatttagggcgactatttacttatttaac 227  Q
    ||||||||||| ||||||||| |||||||||  ||||||||||||||||||    
T  6036600 ggactaaaatcaaatgttgatatatttaggggaactatttacttatttaac 6036550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 31198395 - 31198302
Alignment:
Q  132 atgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaa 226  Q
    ||||||| ||||| | | ||||| || ||||  ||||||||||| ||||||||||| ||||||| | |||||||||  |||||||||||||||||    
T  31198395 atgaaaaattttagagggatcaataacctaaaaaatattttagaaggactaaaatcaaatgttggtatatttaggg-aactatttacttatttaa 31198302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 9686444 - 9686540
Alignment:
Q  132 atgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||| ||||| ||| | |||||  ||||  |||||||||   ||||||||||| ||| ||||| ||||||||  ||||||||||||||||||||    
T  9686444 atgaaaaattttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 9686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 19105458 - 19105509
Alignment:
Q  177 ggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||||||| || |||| | ||||||||| ||||||||||||||||||||    
T  19105458 ggactaaaatcaaaagttggtatatttagggggactatttacttatttaacc 19105509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 31198430 - 31198552
Alignment:
Q  105 aatatagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctattta 204  Q
    |||||||| ||| ||||||||| || |||||||| ||||| | |   |||||  ||||| ||||||||||  | ||||||||| ||||||| | ||||||    
T  31198430 aatatagagcagggactaatttcatagatgaaaaattttagagggc-caaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatattta 31198528  T
Q  205 gggcgactatttacttatttaacc 228  Q
      | ||||||||||||||||||||    
T  31198529 aagggactatttacttatttaacc 31198552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 30172184 - 30172072
Alignment:
Q  115 agagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactat 214  Q
    |||||||||||| ||||||||||| ||||  || || |||||| |||| ||||||||||   ||||||||||| ||||||||| ||||||||| ||| ||    
T  30172184 agagactaatttcatggatgaaaaattttgtaa-aaccaaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccat 30172086  T
Q  215 ttacttatttaacc 228  Q
    ||||||||||||||    
T  30172085 ttacttatttaacc 30172072  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 4304326 - 4304402
Alignment:
Q  152 caaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||| |||| |||||||||||| ||||||||||| ||||||| | ||||||||| || |||||||||||||||||    
T  4304326 caaaaatctaatgaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaacc 4304402  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 30430340 - 30430265
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaaccatagaa 234  Q
    |||| |||||||||||| | ||||||||| ||||||| | ||||||| | ||| ||||||||||||||||| ||||    
T  30430340 ctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaaccaaagaa 30430265  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 32618934 - 32619041
Alignment:
Q  121 taattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttactt 220  Q
    |||||||||  ||||||| ||||| | |||  ||||| ||||  |||||||||||  |||||||||| ||||||||| |||||||    |||||||||||    
T  32618934 taattttataaatgaaaaattttagaggaactaaaaatctaaaaaatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttactt 32619033  T
Q  221 atttaacc 228  Q
    ||||||||    
T  32619034 atttaacc 32619041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 2928164 - 2928096
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaac 227  Q
    |||||||| |||||||| |||||| |||| ||||||| | ||||||||  ||| |||||||||||||||    
T  2928164 ctaaggaaaattttagagggactagaatcaaatgttggtatatttaggaggaccatttacttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 4475215 - 4475108
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| || |||||||||||||||| || | ||||  |||| |||||||||||  | | ||||||| ||||||| | ||||||||  |||| ||||    
T  4475215 gactaatttcatagatgaaaatttttaaaggatt-aaaaccctaaagaatattttaggggaattaaaatcaaatgttggtatatttaggaggacttttta 4475117  T
Q  218 cttatttaa 226  Q
    |||||||||    
T  4475116 cttatttaa 4475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 6931117 - 6931195
Alignment:
Q  150 atcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||||||| ||||| ||| ||||| | ||||||||||| ||||||  | |||||| |  ||||||||||||||||||||    
T  6931117 atcaaaaacctaagaaatgttttaaagggactaaaatcaaatgttagtatatttaagaggactatttacttatttaacc 6931195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 25799183 - 25799073
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    |||||||||||||||||||| |||||  | ||||| |||| ||||   |||||||||  ||||||||||| |||||| ||  ||||||   ||| |||||    
T  25799183 gactaattttatggatgaaattttttggaggaatctaaaacctaaaatatattttaggtggactaaaatcaaatgtttatacatttagaaagaccattta 25799084  T
Q  218 cttatttaacc 228  Q
    | |||||||||    
T  25799083 catatttaacc 25799073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 30746906 - 30747015
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||  | ||||||||||  ||||||| | |||||| |  || ||||||    
T  30746906 gactaatttcatggatgaaaatttttaaagaaatcaaaaatctaaggaatattttgaagggactaaaatgaaatgttggtatattta-gatgattattta 30747004  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  30747005 cttatttaacc 30747015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 30768357 - 30768466
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||  | ||||||||||  ||||||| | |||||| |  || ||||||    
T  30768357 gactaatttcatggatgaaaatttttaaagaaatcaaaaatctaaggaatattttgaagggactaaaatgaaatgttggtatattta-gatgattattta 30768455  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  30768456 cttatttaacc 30768466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 16706455 - 16706330
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||||||||||||| || |||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||||||||| ||||||| | ||||||| |     
T  16706455 tagaacagagactaatttcatagatgaaaaattttagaaggaccaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatatttagagg 16706356  T
Q  209 gactatttacttatttaaccatagaa 234  Q
    || ||||| || |||||||| |||||    
T  16706355 gaatattttctcatttaaccctagaa 16706330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 30749088 - 30749195
Alignment:
Q  121 taattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttactt 220  Q
    |||||||||||||||||| ||||| | ||| ||||||  |||  ||||||||||| | | ||||||| ||||||||| ||||||||  || ||||||| |    
T  30749088 taattttatggatgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgt 30749187  T
Q  221 atttaacc 228  Q
    ||||||||    
T  30749188 atttaacc 30749195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 30770539 - 30770646
Alignment:
Q  121 taattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttactt 220  Q
    |||||||||||||||||| ||||| | ||| ||||||  |||  ||||||||||| | | ||||||| ||||||||| ||||||||  || ||||||| |    
T  30770539 taattttatggatgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgt 30770638  T
Q  221 atttaacc 228  Q
    ||||||||    
T  30770639 atttaacc 30770646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 16706471 - 16706593
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgt---tgatctatttag 205  Q
    |||| ||||||||||||| || |||| ||| ||||| | | | |||||| |||| |||||||||||  ||||||||||| |||||   || | |||||||    
T  16706471 tagagcagagactaatttgatagatggaaaattttagagggaccaaaaacctaaagaatattttagggggactaaaatcaaatgttggtggtatatttag 16706570  T
Q  206 ggcgactatttacttatttaacc 228  Q
    || |||||||||| |||||||||    
T  16706571 ggggactatttacatatttaacc 16706593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 13765667 - 13765561
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| ||  ||||||| | ||||| | | |||||| |||| ||||||||||   ||||||||||| ||||||| | ||||||||| || ||||||    
T  13765667 gactaatttcataaatgaaaaatattaaagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagattattta 13765568  T
Q  218 cttattt 224  Q
    |||||||    
T  13765567 cttattt 13765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 22679457 - 22679332
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||| ||||||||| |||||||||| |||||  | | |  ||||| |||| | |||||||||  ||| |||||||  |||||||| |||| || |     
T  22679457 tagagcagggactaatttcatggatgaaattttttggagggacaaaaaacctaaaggatattttagggggattaaaatcatatgttgatatattcagagg 22679358  T
Q  209 gactatttacttatttaaccatagaa 234  Q
    |||||||||||||||||||| |||||    
T  22679357 gactatttacttatttaaccctagaa 22679332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 22679471 - 22679580
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||| ||| |||||||||||  |||| | | | |||||| ||||  ||||||||||| ||||||||||| ||||||| | ||||||||| ||   ||||    
T  22679471 gactagtttaatggatgaaaaaatttagagggaccaaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgttta 22679570  T
Q  218 cttatttaac 227  Q
    ||||||||||    
T  22679571 cttatttaac 22679580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 23528234 - 23528302
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaac 227  Q
    |||| |||||||| ||| ||||||||||  ||||||||| |||||||   |||||||||||||||||||    
T  23528234 ctaaagaatatttcagaaggactaaaattaaatgttgatatatttagaaagactatttacttatttaac 23528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 13774369 - 13774330
Alignment:
Q  8 cttctgatctcacatctctcgttcaagctcaggtaattca 47  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  13774369 cttctgatctcacttctcttgttcaagctcaggtaattca 13774330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 30749062 - 30748952
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| || |||||||| |||| || | | |||||  |||| |||||||||||  ||||||||||| ||| ||  | ||||||||  ||| |||||    
T  30749062 gactaatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccattta 30748963  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  30748962 cttatttaacc 30748952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 30770513 - 30770403
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| || |||||||| |||| || | | |||||  |||| |||||||||||  ||||||||||| ||| ||  | ||||||||  ||| |||||    
T  30770513 gactaatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccattta 30770414  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  30770413 cttatttaacc 30770403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 31212443 - 31212539
Alignment:
Q  132 atgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    ||||||| ||||| | ||| |||||| |||| ||||||||||   ||||||||||| ||||||| | ||||||||| ||||||||||||||||||||    
T  31212443 atgaaaaattttagaggaaacaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagactatttacttatttaacc 31212539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 9861688 - 9861569
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||| ||| ||||||||| ||  ||||||| ||||| | | | |||||  |||| |||||||||| | ||||||||||| ||||||||| ||||||||      
T  9861688 tagagcagggactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttatagggactaaaatcaaatgttgatatatttaggag 9861589  T
Q  209 gactatttacttatttaacc 228  Q
    ||||||||||||||||||||    
T  9861588 gactatttacttatttaacc 9861569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 6906374 - 6906265
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| ||||||||||| ||||  ||| | |||||  |||||||||||||||   |||||||| || ||||||| | ||||||||| |||||||||    
T  6906374 gactaatttcatggatgaaaaattttggaaggaccaaaagcctaaggaatattttatggggactaaa-tcaaatgttggtatatttagggggactattta 6906276  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  6906275 cttatttaacc 6906265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 14148506 - 14148397
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| || ||||||||||||||   |||  ||||| ||||| ||||||||||  ||||||||||| ||||||||| ||||||||| ||| | |||    
T  14148506 gactaatttcatagatgaaaatttttagg-gaactaaaaacctaagaaatattttaggaggactaaaatcaaatgttgatatatttagggggaccactta 14148408  T
Q  218 cttatttaacc 228  Q
    |||||| ||||    
T  14148407 cttattaaacc 14148397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 33892147 - 33892037
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| || |||||||||||||| ||| | |||||| |||| |||||||||    ||||||||||| ||||||| | |||||| |   ||||||||    
T  33892147 gactaatttcatagatgaaaatttttagaaggaccaaaaacctaaagaatattttgaggggactaaaatcaaatgttggtatatttaagagaactattta 33892048  T
Q  218 cttatttaacc 228  Q
    |||||||||||    
T  33892047 cttatttaacc 33892037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 6906418 - 6906527
Alignment:
Q  118 gactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactattta 217  Q
    ||||||||| ||||||||||||||||  | | |||||||  ||||  |||||||||   ||||||||||| ||||||| | ||||||||| |||  ||||    
T  6906418 gactaatttaatggatgaaaatttttggagggatcaaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatatttagggggaccgttta 6906517  T
Q  218 cttatttaac 227  Q
    ||||||||||    
T  6906518 cttatttaac 6906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 31212383 - 31212314
Alignment:
Q  159 ctaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||| ||||||||||   ||||||||||| ||||||||| |||||| || ||||||||||||||||||||    
T  31212383 ctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggactatttacttatttaacc 31212314  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 5879944 - 5879876
Alignment:
Q  160 taaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaacc 228  Q
    |||| |||||||||||  |||||||||| ||| ||  | ||||||||| ||||||||||||||||||||    
T  5879944 taagaaatattttagaaagactaaaatcaaatattagtatatttagggagactatttacttatttaacc 5879876  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 29242820 - 29242926
Alignment:
Q  121 taattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttactt 220  Q
    |||||| ||| ||||||||||||  | | | | |||| ||||| ||| ||||||| ||||||||||| |||||||||   ||||||| ||| ||||||||    
T  29242820 taatttcatgaatgaaaatttttggagggaccgaaaacctaagaaattttttagagggactaaaatcaaatgttgataattttaggg-gacaatttactt 29242918  T
Q  221 atttaacc 228  Q
    ||||||||    
T  29242919 atttaacc 29242926  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 33892172 - 33892291
Alignment:
Q  109 tagatcagagactaattttatggatgaaaatttttaaaagaatcaaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggc 208  Q
    |||||||| ||||||||| ||  ||||||| ||||| | | | ||||||  ||| |||||||||| | ||||||||||| ||||||| | |||||| |      
T  33892172 tagatcagggactaatttcataaatgaaaaattttagagggaccaaaaacataaagaatattttaaagggactaaaatcaaatgttggtatatttaagaa 33892271  T
Q  209 gactatttacttatttaacc 228  Q
    || | |||||||||||||||    
T  33892272 gattgtttacttatttaacc 33892291  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 5880043 - 5880116
Alignment:
Q  153 aaaaaactaaggaatattttagacggactaaaatctaatgttgatctatttagggcgactatttacttatttaa 226  Q
    ||||| ||||||||||||||| | |||| |||||| ||||||| | ||||||||   || ||||||||||||||    
T  5880043 aaaaatctaaggaatattttaaaaggacaaaaatcaaatgttggtttatttaggagaacaatttacttatttaa 5880116  T

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