View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-17 (Length: 687)
Name: NF3379-Insertion-17
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-17 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 39537282 - 39537049
Alignment:
| Q |
8 |
taaactacctcagtagacagcaaaaatttgaagggcgatttgcacagtaaaataccaaaaagacagcaaagcattgttactttcaaactcataaagtcaa |
107 |
Q |
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| T |
39537282 |
taaactacctcagtagacagcaaaaatttgaagggcaatttgcacagtaaaataccaaaaagacagcaaagcattgttactttcaaactcataaagtcaa |
39537183 |
T |
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| Q |
108 |
ttgacgtattccttttaacaaactgagctatctctgtccagagccatgaacaagggttctttgaccaaatttctgcctgcttggaaaagtgcctaattta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39537182 |
ttgacgtattccttttaacaaactgagctatctctgtccagagccatgaacaagggttctttcaccaaatttctgcctgcttggaaaagtgcctaattta |
39537083 |
T |
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| Q |
208 |
atagcaaaatgaatgaaataagtattaagctatc |
241 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39537082 |
atagcaaaatgaatgaaataagtattaagctatc |
39537049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 424 - 683
Target Start/End: Complemental strand, 39536818 - 39536565
Alignment:
| Q |
424 |
ataatcgactatccatacttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacact |
523 |
Q |
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| T |
39536818 |
ataatcgactatccatacttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacact |
39536719 |
T |
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| Q |
524 |
agcttgattgatctgatgtgtgccctgcaaatcaacatcgaattggtggcaaatccgttttctggcagcagggatatcatggatcctgtattcattacta |
623 |
Q |
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| T |
39536718 |
agcttgattgatctgatgtgtgccctgcaaatcaacatcgaattggt-gcaaatccgttttct-gcagcaggtatatcat-gatcctgcattcattacta |
39536622 |
T |
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| Q |
624 |
gtgagggcacgttcagctctttcttctttccccttcccctgcaactgggtatctcttttt |
683 |
Q |
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| T |
39536621 |
gtga-ggcacgttcagctctttcttcttttccctt-ccctgcaact-ggtatctcttttt |
39536565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 288 - 427
Target Start/End: Complemental strand, 39537002 - 39536863
Alignment:
| Q |
288 |
tattagattagtcatccaaacctaaagatagtgttgaggatagatgtttagagagtcaaccaaattaaaagctttgttgaacgataaacatacaatatgt |
387 |
Q |
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| T |
39537002 |
tattagattagtcatccaaacctaaagatagtgttgaggatagatgtttagagagtcaaccaaattaaaagctttgttgaacgataaacataaaatatgt |
39536903 |
T |
|
| Q |
388 |
aaaagactttgagtaattattgacaagagtcttgtgataa |
427 |
Q |
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| T |
39536902 |
aaaagactttgagtaattattgacaagagtcttgtgataa |
39536863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 440 - 548
Target Start/End: Complemental strand, 2362200 - 2362093
Alignment:
| Q |
440 |
acttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgattgatctga |
539 |
Q |
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|||| ||||||||||| | | |||||||| |||||| |||| |||||||||||| ||| ||| ||||||||| || | |||| |||||||||||| |||| |
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| T |
2362200 |
acttaactacctctatgt-gctctacaagaaaatacttgatatataccttcaatctgcattacagaaccagttctgcaaacagtagcttgattgacctga |
2362102 |
T |
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| Q |
540 |
tgtgtgccc |
548 |
Q |
| |
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|||| |||| |
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| T |
2362101 |
tgtgagccc |
2362093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 473 - 541
Target Start/End: Complemental strand, 2364418 - 2364350
Alignment:
| Q |
473 |
tacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgattgatctgatg |
541 |
Q |
| |
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||||||||||||||||||||| |||| | ||||||||| ||||||||||| |||||||||| |||||| |
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| T |
2364418 |
tacatgatttataccttcaatctgctacacagaaccagttcttctaacacttgcttgattgacctgatg |
2364350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 531
Target Start/End: Original strand, 2489699 - 2489796
Alignment:
| Q |
434 |
atccatacttgactacctctattttgatctacaagtaa-atacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgat |
531 |
Q |
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|||| ||||||||||||||| ||| | ||||||| || ||| |||||||||||||||||| ||||| | |||| |||| ||| |||||| |||||||| |
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| T |
2489699 |
atccttacttgactacctctgttt-gttctacaaaaaatatatatgatttataccttcaatctgcttcacagaatcagttcttttaacacaagcttgat |
2489796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 2543996 - 2544053
Alignment:
| Q |
431 |
actatccatacttgactacctctattttgatctacaagtaaatacatgatttatacctt |
489 |
Q |
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|||| ||||||||||||||||||| || | |||| ||| |||||||||||||||||||| |
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| T |
2543996 |
actacccatacttgactacctctactt-gttctataagaaaatacatgatttatacctt |
2544053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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