View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-18 (Length: 384)
Name: NF3379-Insertion-18
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-18 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 106984 - 107242
Alignment:
| Q |
8 |
caagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaatctctttg |
107 |
Q |
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| T |
106984 |
caagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaatctctttg |
107083 |
T |
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| Q |
108 |
tatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttgattttctcaaaaatagctctaagatgaagacagaatct |
207 |
Q |
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| T |
107084 |
tatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttgattttctcaaaaatagctctaagatgaagacagaatct |
107183 |
T |
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| Q |
208 |
aacatgatcatgtccacaaactcatcatccttgatggtatgatcaaactcaaaatagaa |
266 |
Q |
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| T |
107184 |
aacatgatcatgtccacaaactcatcatccttgatggtatgatcaaactcaaaatagaa |
107242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 113645 - 113792
Alignment:
| Q |
8 |
caagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaatctctttg |
107 |
Q |
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| T |
113645 |
caagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacaaaaaatggaagctgattttcaaggagtaacaaatctctttg |
113744 |
T |
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| Q |
108 |
tatacccttgtaaatccatgatgttgtgaacatgt-aatccttttccc |
154 |
Q |
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| T |
113745 |
tatacccttgtaaatccatgatgttgtgaacatgtaaatccttttccc |
113792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 107307 - 107360
Alignment:
| Q |
331 |
gtcattctttcccaaaagtaatgaaaatacctttgtttttgtgtacgcattgaa |
384 |
Q |
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| T |
107307 |
gtcattctttcccaaaagtaatgaaaatacctttgtttttgtgtatgcattgaa |
107360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 142771 - 142668
Alignment:
| Q |
79 |
tgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttgattttctca |
178 |
Q |
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||||||||||| || ||||||||||||||| | |||||||||||||||||| | |||||| |||| |||||| ||||||||| || |||||||| |
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| T |
142771 |
tgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccatgatgttttaaacatgaaatcattttcctgttcagattctttaacttttctca |
142672 |
T |
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| Q |
179 |
aaaa |
182 |
Q |
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|||| |
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| T |
142671 |
aaaa |
142668 |
T |
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