View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-19 (Length: 603)
Name: NF3379-Insertion-19
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-19 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0360 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 7 - 603
Target Start/End: Complemental strand, 53919525 - 53918932
Alignment:
| Q |
7 |
aattcaatccttaggaaattaacagttaagcataaaaaatctttcattgcgcaaaactcaaatcattttccttgttcgaatacaacgacaatcaattaat |
106 |
Q |
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| T |
53919525 |
aattcaatccttaggaaattaacagtgaagcataaaaaatctttcattgcgcaaaactcaaatcattttccttgttcgaatacaacgacaatcaattaat |
53919426 |
T |
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| Q |
107 |
ttttactcctacatttatttatcttctaaaaactttaactgatttgattaattatttatcttttaaaaaggcttagcagcgcagctcgttgctcgtttgt |
206 |
Q |
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| T |
53919425 |
ttttacttctacatttatttatcttctaaaaactttaactgatttgattaattatttatcttttaaaaagacttagcagcgcagctcgttactcgtttgt |
53919326 |
T |
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| Q |
207 |
cttttactcatgcataatactccatccgtctatatatgtaagattctttctattaaatgcaaaatgtacttacatagagggacgaatggagtatatataa |
306 |
Q |
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| T |
53919325 |
cttctactcatgcataatactccatccgtctatatatgtaagattctttctattagatgcaaaatgtacttacatagagggacgaatggagtatatataa |
53919226 |
T |
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| Q |
307 |
aactcaaattatagagtaaaaaattaattaatttcgatgtttgattaccttaatattaaagg--tatagaacataaccaccaatgactcattcccataat |
404 |
Q |
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| T |
53919225 |
aactcaaattctagagtaaaaaattaattaatttctatgtttgattaccttaatgttaaaggtatatagaacataaccaccaatgactcattcccataat |
53919126 |
T |
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| Q |
405 |
tttattgtcactagtatgatgatgatgataataataatattttatcggtcacgagtgattggctgcaacgacaataagaccttttattttagagagacaa |
504 |
Q |
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| T |
53919125 |
tttattgtcactagtatgatgatgatgataataataatattttatcggtcacgagtgattggctgcaacgacaataagaccttttattttagagagacaa |
53919026 |
T |
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| Q |
505 |
taagacctattgaaatagcttggctatgtaaacagtatctttatatagtaatgtctttgtcgagcaagaaggggtcaaaaataggttcattgctttcta |
603 |
Q |
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| T |
53919025 |
taagacctattgaaatagcttgcct-----actagtatctttatatagtaatgtctttgtcgagcaagaaggggtcaaaaataggttcattgctttcta |
53918932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 14894 - 14948
Alignment:
| Q |
332 |
aattaatttcgatgtttgattaccttaatattaaaggtatagaacataaccacca |
386 |
Q |
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| T |
14894 |
aattcatttctatgtttaattaccttaatgttaaaggtataaaacataaccacca |
14948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 5860422 - 5860475
Alignment:
| Q |
333 |
attaatttcgatgtttgattaccttaatattaaaggtatagaacataaccacca |
386 |
Q |
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| T |
5860422 |
attaatttctctgtttaattaccttaatgttaaaggtataaaacataaccacca |
5860475 |
T |
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