View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379-Insertion-2 (Length: 1010)

Name: NF3379-Insertion-2
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379-Insertion-2
NF3379-Insertion-2
[»] chr1 (2 HSPs)
chr1 (8-1008)||(37996128-37997135)
chr1 (461-578)||(28720045-28720162)
[»] chr6 (13 HSPs)
chr6 (469-870)||(3254883-3255289)
chr6 (338-861)||(7871966-7872489)
chr6 (470-860)||(7860647-7861036)
chr6 (471-679)||(14435594-14435799)
chr6 (371-679)||(7819862-7820170)
chr6 (469-677)||(7818245-7818452)
chr6 (470-577)||(7815414-7815521)
chr6 (468-623)||(14438250-14438405)
chr6 (471-623)||(10416416-10416568)
chr6 (483-573)||(7805772-7805862)
chr6 (598-754)||(7814830-7814988)
chr6 (702-759)||(14438477-14438534)
chr6 (366-407)||(3254771-3254812)
[»] chr4 (2 HSPs)
chr4 (469-850)||(14018390-14018776)
chr4 (366-458)||(14018796-14018888)
[»] scaffold1089 (1 HSPs)
scaffold1089 (461-754)||(610-894)
[»] scaffold1377 (1 HSPs)
scaffold1377 (468-618)||(1341-1491)
[»] chr3 (3 HSPs)
chr3 (462-797)||(2467516-2467842)
chr3 (638-679)||(43684641-43684682)
chr3 (706-759)||(43693756-43693809)
[»] chr5 (7 HSPs)
chr5 (470-593)||(14308524-14308647)
chr5 (471-620)||(31262397-31262546)
chr5 (701-754)||(24005182-24005237)
chr5 (701-797)||(23940374-23940472)
chr5 (541-617)||(25614278-25614354)
chr5 (552-616)||(24005041-24005105)
chr5 (495-679)||(32429443-32429623)
[»] chr7 (4 HSPs)
chr7 (548-626)||(19316676-19316754)
chr7 (492-530)||(8794149-8794187)
chr7 (323-389)||(28681280-28681346)
chr7 (366-423)||(19316476-19316533)


Alignment Details
Target: chr1 (Bit Score: 869; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 869; E-Value: 0
Query Start/End: Original strand, 8 - 1008
Target Start/End: Original strand, 37996128 - 37997135
Alignment:
Q  8 ataaacccaataagcaattcatgaagtaattaattaacctaaaccgattctctatgtagtggcggctcgactagatcgtcaaaatcagaaccaccaaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37996128 ataaacccaataagcaattcatgaagtaattaattaacctaaaccgattctctatgtagtggcggctcgactagatcatcaaaatcagaaccaccaaatc 37996227  T
Q  108 aaatcgtgttttattgaaatgttgaaaggaaaaagaaatggaattaaacgagacttattcaaataaaattaaaagcattgatccaaatagaatcattatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996228 aaatcgtgttttattgaaatgttgaaaggaaaaagaaatggaattaaacgagacttattcaaataaaattaaaagcattgatccaaatagaatcattatc 37996327  T
Q  208 gagcacgatggtagttcaccctagaatttgacaacaccaaagatcatcatcccgattaatttgtacaaaagaagaccaagcatgttcctactacagttca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37996328 gagcacgatggtagttcaccctagaatttgacaacaccaaagatcatcatcccgattaatttgtacaaaagaagaccaagcctgttcctactacagttca 37996427  T
Q  308 aactatcaaacaatgtggttgcatattagaataacattgataattttagtaacattatttaaattcaaatgaaagtttacatgttgtagatatccttgga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996428 aactatcaaacaatgtggttgcatattagaataacattgataattttagtaacattatttaaattcaaatgaaagtttacatgttgtagatatccttgga 37996527  T
Q  408 taggagtacagttcttttatgatccgacttttttccaaaagtattccatttgcagtaacttcgattgtcatgtcttgtaaaagacttgcattatgcaaaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37996528 taggagtacagttcttttatgatccgacttttttccaaaagtattccatttgcagtaacttcgattctcatgtcttgtaaaagacttgcattatgcaaaa 37996627  T
Q  508 tatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatcttaggtgagaccaaatacactcaagaactgcaattgggca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  37996628 tatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatcttaggtgagacgaaatacactcaagaactgcaactgggca 37996727  T
Q  608 tttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacatttattaaaatatatgatnnnnnnngaactagcaaacaaacaa 707  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  37996728 tttccattccttggatgagttggtctccgtccactgtcaaaggaataaaaaataacatttattaaaatatatgataaaaaaagaactagcaaacaaacaa 37996827  T
Q  708 acatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaacagcggagaagttctaccacaccatcccagcaatgaaatgagtgatga 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37996828 acatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaacagcggagaagttctaccacaccatcccaacaatgaaatgagtgatga 37996927  T
Q  808 caaaacacaagatcaatatgaattaagtttgg-aacactggaatgactttgaaagaagcctcttgatttctggattcagtgggtatacgtag-aattc-a 904  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |    
T  37996928 caaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctcttgatttctggattcagtggttatacgtagaaattcaa 37997027  T
Q  905 cattattaataccattaaatag-acatccattggactgatcctcggctctaatc-attaagac-aggtcaag--attccacccttttggtgcatcgtatt 999  Q
    |||||||||||||||||||||| |||||||||| |||||| ||| ||||||||| ||| |||| ||||||||   ||| |||||||||||||||||||||    
T  37997028 cattattaataccattaaatagaacatccattgaactgattctc-gctctaatcaatttagacaaggtcaaggatttcaacccttttggtgcatcgtatt 37997126  T
Q  1000 catcatgat 1008  Q
    |||||||||    
T  37997127 catcatgat 37997135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 461 - 578
Target Start/End: Original strand, 28720045 - 28720162
Alignment:
Q  461 agtaacttcgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagta 560  Q
    |||||| || |||||||| ||||||||||| || ||||| |||| ||||||  |||||||||| |||||||   ||||||||||||| ||||||||||||    
T  28720045 agtaacctcaattgtcatttcttgtaaaagtctcgcattctgcagaatatactttgcaaatcggagatcattttccgagccttcaaaatttaaaatagta 28720144  T
Q  561 catgatcttaggtgagac 578  Q
    ||||| || |||||||||    
T  28720145 catgacctgaggtgagac 28720162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 3e-54; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 469 - 870
Target Start/End: Original strand, 3254883 - 3255289
Alignment:
Q  469 cgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatct 568  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||  |||||| | |||| ||||||||| ||||||||| |    
T  3254883 cgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgt 3254982  T
Q  569 taggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacattta 668  Q
     ||||| ||| ||| ||| ||| |||| | |||||||||||| |||| | |||| ||| | |||||| |||||||||| | | |||||||||||||||||    
T  3254983 gaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctggtctccatccactgtcagaaggataaaaaataacattta 3255082  T
Q  669 ttaaaatatat----gatnnnnnnngaactagcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaacagcg 764  Q
    | ||||| |||     |        |||| | ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| |||| | ||  |||    
T  3255083 tcaaaatctataaaaaagaaaaaaagaacaaacaaacaaacaaatgtactactcaacaaacctttttaataaaaagaatttgaagattgggagaatggcg 3255182  T
Q  765 gagaagttctaccacaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttg-gaacactggaatgactttgaaagaa 863  Q
    |||||||||||| |||| ||||||   |||||||| |  || ||||||||| || ||| |||||||||||||||  ||||   ||||||| ||||||||     
T  3255183 gagaagttctactacacaatcccaattatgaaatgtgaaataacaaaacactagttcagtatgaattaagtttgaaaacatcagaatgacattgaaagag 3255282  T
Q  864 gcctctt 870  Q
    |||||||    
T  3255283 gcctctt 3255289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 338 - 861
Target Start/End: Complemental strand, 7872489 - 7871966
Alignment:
Q  338 ataacattgataattttagtaacattatttaaattcaaatgaaagtttacatgttgtagatatccttggataggagtacagttcttttatgatccgactt 437  Q
    |||||| |||||| | |||||||| || ||||||| |||||||||||||||| ||| ||||||| ||||| | ||| | | ||||| | | ||| |||||    
T  7872489 ataacactgataaatctagtaacaatacttaaatttaaatgaaagtttacatcttgaagatatcgttggacaagaggataattcttctttaatctgactt 7872390  T
Q  438 ttttccaaaagtattccatttgcagtaacttcgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccg 537  Q
    ||  ||| | | ||||  || | ||||||  ||||| ||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||  || |    
T  7872389 ttccccagatgcattcggttagtagtaacgccgattttcatgtcttctaaaagacctgcattctgcaaaatatatgttgcaaatcgaagatcatttgctg 7872290  T
Q  538 agccttcaaagtttaaaatagtacatgatcttaggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgt 637  Q
    |||| |  ||||||||||||||||||||||| ||||||||| ||| ||| ||| |||||| ||  |||  ||||||||| ||||||||| | |     ||    
T  7872289 agccatggaagtttaaaatagtacatgatctaaggtgagacgaaacacattcatgaactgaaagagggtgtttccattcattggatgagctggctgttgt 7872190  T
Q  638 ccactgtcaaaggaataaaaaataacatttattaaaatatatga-tnnnnnnngaactagcaaacaaacaaacatactactcaacaaacctttctaatag 736  Q
    ||||| ||||||| |||||| | ||||||| | |||||||||||         |||  | |||| |||||||   ||||||||||| |||||| |||||     
T  7872189 ccactttcaaagg-ataaaata-aacatttgtcaaaatatatgaggaaaaaaagaataatcaaaaaaacaaatgcactactcaacatacctttttaataa 7872092  T
Q  737 aaagaatttgaagcttggaacaacagcggagaagttctaccacaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtt 836  Q
     ||||||||||||||||| ||||  |||||| | |||| | | ||||||||| |||||||| |||  || ||||||||| || ||||||||| |||||||    
T  7872091 taagaatttgaagcttgggacaatggcggagcaattctcctataccatcccaacaatgaaacgagctattacaaaacactagttcaatatgatttaagtt 7871992  T
Q  837 tgg-aacactggaatgactttgaaag 861  Q
    ||| |||| ||||||| || ||||||    
T  7871991 tggaaacagtggaatggctatgaaag 7871966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 470 - 860
Target Start/End: Complemental strand, 7861036 - 7860647
Alignment:
Q  470 gattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctt 569  Q
    |||| |||||||| |||| ||| ||||||| |||||||||||| || |||||  ||||||||  | |||||||| |||||||| || | ||||||||||     
T  7861036 gattttcatgtctcgtaagagagttgcattctgcaaaatatattttacaaatttaagatcatttgtcgagccttgaaagtttagaacaatacatgatctg 7860937  T
Q  570 aggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacatttat 669  Q
    ||||||||| |||| || | | |||| | ||||||||||||||||||||||| |||| | || | | ||||||||| |||  ||||||||||| ||| ||    
T  7860936 aggtgagacgaaatgcatttaggaaccgaaattgggcatttccattccttggttgagctggtattcatccactgtccaagagataaaaaataatattaat 7860837  T
Q  670 taaaatatatgatnnnnnnngaactagcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaacagcggagaa 769  Q
     |||||||| |          ||  | |||  ||||||||  |||||| | |||||||| | ||||||||||||||||||||||| |||   |||||| |    
T  7860836 caaaatatacg--gaaaaagaaaacaccaagtaaacaaacgaactactaatcaaaccttcccaatagaaagaatttgaagcttgggacagtggcggagga 7860739  T
Q  770 gttctaccacaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttgg-aacactggaatgactttgaaa 860  Q
    ||| ||  ||||||||||| ||||||| |||| || |||||||||| || || ||||||| ||||||||| |||| ||||||||||||||||    
T  7860738 gttgtaatacaccatcccaacaatgaagtgagcgacgacaaaacactagttctatatgaactaagtttggaaacagtggaatgactttgaaa 7860647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 471 - 679
Target Start/End: Original strand, 14435594 - 14435799
Alignment:
Q  471 attgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctta 570  Q
    |||||||| ||||||||||| || ||||| ||||| |||||| |||||||| |||| ||||  ||||| ||||||||||||||||| ||||||||||| |    
T  14435594 attgtcatatcttgtaaaagcctcgcattctgcaatatatattttgcaaattgaaggtcatttgccgatccttcaaagtttaaaattgtacatgatctga 14435693  T
Q  571 ggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacatttatt 670  Q
    |||||||| ||| ||| |||| ||| | | |||| |||||||||||||||||||||    | | | |||||||||||||| || ||||  ||||||||||    
T  14435694 ggtgagacgaaacacattcaataaccgaatttggccatttccattccttggatgag---ctgtacctccactgtcaaagggatgaaaagcaacatttatt 14435790  T
Q  671 aaaatatat 679  Q
    |||||||||    
T  14435791 aaaatatat 14435799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 371 - 679
Target Start/End: Original strand, 7819862 - 7820170
Alignment:
Q  371 ttcaaatgaaagtttacatgttgtagatatccttggataggagtacagttcttttatgatccgacttttttccaaaagtattccatttgcagtaacttcg 470  Q
    |||||||||||||||||||  |  ||||||||||||||||||| ||| ||||| ||| ||   ||||||||||||||  ||||  |  | | |||   |     
T  7819862 ttcaaatgaaagtttacatccttgagatatccttggataggaggacaattcttctataattgcacttttttccaaaaccattctttcagtactaaaacca 7819961  T
Q  471 attgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctta 570  Q
    |||||||| ||||||||||||   ||||| |  |||| |||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||| |    
T  7819962 attgtcatttcttgtaaaagatacgcattctttaaaacatattttgcaaatcgaagatcattttccgagccttcaaagtttaaaatagtacatgatctga 7820061  T
Q  571 ggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacatttatt 670  Q
    ||| || |  | | || ||||||| || | ||||||||||| |||  ||| || || | |    | |||||||||| ||| ||||||| ||||||||||     
T  7820062 ggttagtcgtattccattcaagaattgaatttgggcatttcaatttattgtataagctggcaaacctccactgtcatagggataaaaattaacatttatc 7820161  T
Q  671 aaaatatat 679  Q
    |||||||||    
T  7820162 aaaatatat 7820170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 469 - 677
Target Start/End: Complemental strand, 7818452 - 7818245
Alignment:
Q  469 cgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatct 568  Q
    ||||| |||||||| ||||||| ||  |||| | |||||||||| ||| ||||||||||| ||    | |||||| |||||||||||||||||||||| |    
T  7818452 cgattttcatgtctcgtaaaagcctcacattcttcaaaatatatgttgtaaatcgaagataatttatcaagccttgaaagtttaaaatagtacatgattt 7818353  T
Q  569 taggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacattta 668  Q
     |||| |||| ||| ||| ||||||||   |||| || |||||||||||||||||||| | |||    ||||| |||||||  ||||||||| |||||||    
T  7818352 gaggttagacgaaacacattcaagaaccaaaatttggtatttccattccttggatgagctggtcattatccaccgtcaaagagataaaaaat-acattta 7818254  T
Q  669 ttaaaatat 677  Q
    | |||||||    
T  7818253 taaaaatat 7818245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 470 - 577
Target Start/End: Complemental strand, 7815521 - 7815414
Alignment:
Q  470 gattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctt 569  Q
    |||| ||||||| || || ||||| ||||| |||||||||||| ||| ||||||||||||||   |||||||||  |||||||||||||||||||||||     
T  7815521 gattttcatgtcctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctg 7815422  T
Q  570 aggtgaga 577  Q
    ||||||||    
T  7815421 aggtgaga 7815414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 468 - 623
Target Start/End: Original strand, 14438250 - 14438405
Alignment:
Q  468 tcgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatc 567  Q
    ||||||||||| ||||||||||| || ||||| ||||||||||||  |||||||| |||||     |   ||||||||||||||||||| ||||| ||||    
T  14438250 tcgattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgatgcaaatctaagattcctagagaagccttcaaagtttaaaattgtacaggatc 14438349  T
Q  568 ttaggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggat 623  Q
    | |||||| || ||| ||||||| |||| | | ||||| |||||||||||||||||    
T  14438350 tgaggtgaaacgaaacacactcaggaaccgaatttgggtatttccattccttggat 14438405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 471 - 623
Target Start/End: Complemental strand, 10416568 - 10416416
Alignment:
Q  471 attgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctta 570  Q
    ||||||||||||||||||||||  |  || || ||||||||| |||||||| |||||||||   ||||||| || |||||||| |||||||||||||| |    
T  10416568 attgtcatgtcttgtaaaagacccgatttctgtaaaatatattttgcaaattgaagatcattttccgagccatcgaagtttaatatagtacatgatctaa 10416469  T
Q  571 ggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggat 623  Q
    ||| |||| ||   || ||||||||   ||||||| |||||||||||| ||||    
T  10416468 ggttagacgaatcccattcaagaaccaaaattgggtatttccattcctcggat 10416416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 7805772 - 7805862
Alignment:
Q  483 tgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatcttaggt 573  Q
    |||||||||||  |||| |  ||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||||||||| ||||    
T  7805772 tgtaaaagactcccattctttaaaatatattttgcaaatcgaagatcattatccgagccgtcaaagtttaaaatagtacatgatctgaggt 7805862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 598 - 754
Target Start/End: Complemental strand, 7814988 - 7814830
Alignment:
Q  598 caattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaataacatttatt-aaaatatatgatnnnnnnn-gaacta 695  Q
    |||| ||||||||||||||||||||| || |||| | | || |||||||| |  |||||||| |||||||||  |||||||||||         |||| |    
T  7814988 caatcgggcatttccattccttggataaggttgtattcttcgactgtcaaggagataaaaaacaacatttatacaaaatatatgaaagaaaaaagaacaa 7814889  T
Q  696 gcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttgg 754  Q
    ||||||||||||| ||||||||||  |||||||| |||| |||||||||||||||||||    
T  7814888 gcaaacaaacaaatatactactcagaaaacctttttaattgaaagaatttgaagcttgg 7814830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 759
Target Start/End: Original strand, 14438477 - 14438534
Alignment:
Q  702 aaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaa 759  Q
    ||||||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||    
T  14438477 aaacaaatatattactcaacaaaccttattaatataaagaatttgaagcttgggacaa 14438534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 3254771 - 3254812
Alignment:
Q  366 ttaaattcaaatgaaagtttacatgttgtagatatccttgga 407  Q
    |||||||||||||||| ||||||| ||| |||||||||||||    
T  3254771 ttaaattcaaatgaaattttacattttggagatatccttgga 3254812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 469 - 850
Target Start/End: Complemental strand, 14018776 - 14018390
Alignment:
Q  469 cgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatct 568  Q
    ||||| ||||||||||||||| ||  ||||| |||||||| ||| ||||||||||||||||||  ||||||   ||||||||||||||||||||||||||    
T  14018776 cgattttcatgtcttgtaaaatacgggcattctgcaaaatgtattttgcaaatcgaagatcatttgccgagttatcaaagtttaaaatagtacatgatct 14018677  T
Q  569 taggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaa-ggaataaaaaataacattt 667  Q
     || |||||| ||| ||| ||||||  || |||||||||||||||||||||||| |||   |||| | |||||||||||| ||| ||||||| || ||||    
T  14018676 aagatgagacgaaacacattcaagatttgaaattgggcatttccattccttggacgagcgggtcttcctccactgtcaaagggattaaaaaagaaaattt 14018577  T
Q  668 attaaaatatatg---atnnnnnnngaactagcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaacagcg 764  Q
    || ||||||||||   |         ||  |  |||||||||||  ||||||||||||||||||| ||||| |||||||||| ||| | | | ||  |||    
T  14018576 atcaaaatatatggaaaaaacaaaataaaaataaaacaaacaaatttactactcaacaaacctttttaataaaaagaatttggagccttggagaatggcg 14018477  T
Q  765 gagaagttctaccacaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttg-gaacactggaat 850  Q
    ||| |||||||| |||||||||||  |||||| ||||||||  |||||||| || |||||||||| ||||||||  |||||||||||    
T  14018476 gagcagttctacaacaccatcccaagaatgaattgagtgataccaaaacactagttcaatatgaactaagtttgaaaacactggaat 14018390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 14018888 - 14018796
Alignment:
Q  366 ttaaattcaaatgaaagtttacatgttgtagatatccttggataggagtacagttcttttatgatccgacttttttccaaaagtattccattt 458  Q
    ||||||||||||||||||||||||  |  ||||||||||| | ||||| | | ||||| | | ||| ||| |||||||||||||||| |||||    
T  14018888 ttaaattcaaatgaaagtttacatcctcgagatatccttgaaaaggaggataattcttctttaatctgacctttttccaaaagtatttcattt 14018796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 83; Significance: 9e-39; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 461 - 754
Target Start/End: Original strand, 610 - 894
Alignment:
Q  461 agtaacttcgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagta 560  Q
    |||||| ||||||||||| ||||||||||  || ||||| |||| ||||||| |||||||| |||| | ||  ||||| ||||||||||||||||| |||    
T  610 agtaacgtcgattgtcatatcttgtaaaaacctagcattctgcagaatatatgttgcaaatagaaggttattagccgatccttcaaagtttaaaattgta 709  T
Q  561 catgatcttaggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaat 660  Q
    |||||||| ||||||||| ||| ||| |||||||| | | |||| ||||||||||||||||||||| | |    | |||||||||||||| || ||||      
T  710 catgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatgagctgg---acctccactgtcaaagggatgaaaagc 806  T
Q  661 aacatttattaaaatatatgatnnnnnnngaactagcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttgg 754  Q
    ||||||||| |||||||||  |       |||    ||| |||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||    
T  807 aacatttatcaaaatatat--ttgaaacagaa----caagcaaacaaatatattactcaacaaacctttctaataaaaacaatttgaagcttgg 894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 468 - 618
Target Start/End: Original strand, 1341 - 1491
Alignment:
Q  468 tcgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatc 567  Q
    ||||||||||| ||||||||||| || ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||||| ||||    
T  1341 tcgattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgttgcaaatcgaagattattggccgagccttcaaagtttaaaattgtacaggatc 1440  T
Q  568 ttaggtgagaccaaatacactcaagaactgcaattgggcatttccattcct 618  Q
    | ||||||||  ||| ||| ||| |||| | | || || ||||||||||||    
T  1441 tgaggtgagaggaaacacattcaggaaccgaatttaggtatttccattcct 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 462 - 797
Target Start/End: Original strand, 2467516 - 2467842
Alignment:
Q  462 gtaacttcgattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtac 561  Q
    ||||| ||||||||||||| ||||||||  ||  |||| ||||| |||||| ||||||||||||||||||  || || |||||||| |||||||| ||||    
T  2467516 gtaacgtcgattgtcatgttttgtaaaattctcccattctgcaatatatatgttgcaaatcgaagatcatttgcagacccttcaaaatttaaaattgtac 2467615  T
Q  562 atgatcttaggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaataaaaaata 661  Q
    ||||| | ||||||||| |||  || |||||||| | | |||| ||||||||||| |||| | || | |      ||||||||||||||||| |||| ||    
T  2467616 atgatataaggtgagacgaaacgcattcaagaaccgaacttggacatttccattctttggctaagctgg---agctccactgtcaaaggaatgaaaagta 2467712  T
Q  662 acatttattaaaatatatgatnnnnnnngaactagcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaaca 761  Q
    |||||| | ||||||||||         |||    ||| |||||||| ||| |||||||||||||||||||||| ||| |||||||||||||  |||       
T  2467713 acatttttcaaaatatatg--taaaatagaa----caagcaaacaaatatattactcaacaaacctttctaataaaaacaatttgaagcttgcgacagtg 2467806  T
Q  762 gcggagaagttctaccacaccatcccagcaatgaaa 797  Q
    || ||| |||||||| |||| |||||||| ||||||    
T  2467807 gcagagcagttctactacacaatcccagccatgaaa 2467842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 679
Target Start/End: Original strand, 43684641 - 43684682
Alignment:
Q  638 ccactgtcaaaggaataaaaaataacatttattaaaatatat 679  Q
    |||||||| |||| ||||||||||||||| ||||||||||||    
T  43684641 ccactgtcgaagggataaaaaataacattcattaaaatatat 43684682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 706 - 759
Target Start/End: Original strand, 43693756 - 43693809
Alignment:
Q  706 aaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaa 759  Q
    |||||||||| || |||||||||||| ||  |||||||||||||||||| ||||    
T  43693756 aaacatactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaa 43693809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 470 - 593
Target Start/End: Complemental strand, 14308647 - 14308524
Alignment:
Q  470 gattgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctt 569  Q
    ||||||||||||||| ||| | ||||| || |||||||||||| ||||||||||||||||||   |  ||| || ||||||||||||||||||||||||     
T  14308647 gattgtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcatttccatagcattgaaagtttaaaatagtacatgatctg 14308548  T
Q  570 aggtgagaccaaatacactcaaga 593  Q
    ||||| ||| ||| ||| ||||||    
T  14308547 aggtgtgacaaaacacattcaaga 14308524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 471 - 620
Target Start/End: Complemental strand, 31262546 - 31262397
Alignment:
Q  471 attgtcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatctta 570  Q
    |||| |||||||||||| | | | ||||| |||||||||||| | |||||||| | |||||| ||||||||||  |||| ||| ||||||||||| || |    
T  31262546 attgccatgtcttgtaagatattcgcattctgcaaaatatatgtagcaaatcgcatatcatctgccgagcctttgaagtctaatatagtacatgacctca 31262447  T
Q  571 ggtgagaccaaatacactcaagaactgcaattgggcatttccattccttg 620  Q
     |||| || ||||||| |||||| |   ||||||||||||||||||||||    
T  31262446 agtgacacgaaatacattcaagagccaaaattgggcatttccattccttg 31262397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 701 - 754
Target Start/End: Original strand, 24005182 - 24005237
Alignment:
Q  701 caaacaaacatactactc--aacaaacctttctaatagaaagaatttgaagcttgg 754  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  24005182 caaacaaacatactactctcaacaaacctttctaataaaaagaatttgaagcttgg 24005237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 701 - 797
Target Start/End: Original strand, 23940374 - 23940472
Alignment:
Q  701 caaacaaacatactactc--aacaaacctttctaatagaaagaatttgaagcttggaacaacagcggagaagttctaccacaccatcccagcaatgaaa 797  Q
    ||||||||||||||||||  |||||||||| |||||| |||||||||||||||||| ||||     ||| |  ||||||||||||||||||| ||||||    
T  23940374 caaacaaacatactactctcaacaaaccttactaataaaaagaatttgaagcttgggacaattcttgagcaaatctaccacaccatcccagccatgaaa 23940472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 617
Target Start/End: Complemental strand, 25614354 - 25614278
Alignment:
Q  541 cttcaaagtttaaaatagtacatgatcttaggtgagaccaaatacactcaagaactgcaattgggcatttccattcc 617  Q
    |||| |||||||||||||||||||| || |||||| || ||||||| |||||| |   |||||||||||||||||||    
T  25614354 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 25614278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 24005041 - 24005105
Alignment:
Q  552 aaaatagtacatgatcttaggtgagaccaaatacactcaagaactgcaattgggcatttccattc 616  Q
    ||||||||||||||||| ||||||||  ||| ||| ||| |||| | ||||||||||||||||||    
T  24005041 aaaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattc 24005105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 495 - 679
Target Start/End: Original strand, 32429443 - 32429623
Alignment:
Q  495 gcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatcttaggtgagaccaaatacactcaagaa 594  Q
    ||||| |||||||||||| |||| ||| ||||||| ||    || ||||||||||  |||||||||||||| || ||||||  | |||  || ||||||     
T  32429443 gcattctgcaaaatatatgttgcgaattgaagatcgtcattagatccttcaaagtggaaaatagtacatgacctgaggtga--cgaaacgcattcaagag 32429540  T
Q  595 ctgcaattgggcatttccattccttggatgagtttgtctccgtccactgtcaaaggaata-aaaaataacatttattaaaatatat 679  Q
     || ||||||||| ||||||||||||||| || | || |   ||||||| |||||  ||| |||||||||||||| ||||||||||    
T  32429541 ttgaaattgggcagttccattccttggataagctggtat---tccactgccaaagagatacaaaaataacatttaataaaatatat 32429623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 548 - 626
Target Start/End: Original strand, 19316676 - 19316754
Alignment:
Q  548 gtttaaaatagtacatgatcttaggtgagaccaaatacactcaagaactgcaattgggcatttccattccttggatgag 626  Q
    ||||||| | ||||||||||| ||||||||  ||| ||| |||||||||| ||||||||||||||||||||| ||||||    
T  19316676 gtttaaagttgtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttccattccttagatgag 19316754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 8794187 - 8794149
Alignment:
Q  492 cttgcattatgcaaaatatatcttgcaaatcgaagatca 530  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  8794187 cttgcattctgcaaaatatatcttgcaaattgaagatca 8794149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 28681280 - 28681346
Alignment:
Q  323 tggttgcatattagaataacattgataattttagtaacattatttaaattcaaatgaaagtttacat 389  Q
    ||||| ||| |||||| |||| |||||||| |||||||| || |||  |||||||||||||||||||    
T  28681280 tggtttcatgttagaacaacactgataattctagtaacaatacttatgttcaaatgaaagtttacat 28681346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 19316476 - 19316533
Alignment:
Q  366 ttaaattcaaatgaaagtttacatgttgtagatatccttggataggagtacagttctt 423  Q
    |||| |||||||||||||||||||  |  ||||||||||||||||||| ||| |||||    
T  19316476 ttaagttcaaatgaaagtttacatcctcgagatatccttggataggaggacaattctt 19316533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University