View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379-Insertion-4 (Length: 997)

Name: NF3379-Insertion-4
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379-Insertion-4
NF3379-Insertion-4
[»] chr1 (10 HSPs)
chr1 (8-711)||(35371904-35372605)
chr1 (12-383)||(35377879-35378248)
chr1 (744-995)||(35371464-35371720)
chr1 (176-382)||(35358962-35359172)
chr1 (16-109)||(35359226-35359319)
chr1 (796-876)||(21620278-21620359)
chr1 (319-379)||(35354973-35355033)
chr1 (317-380)||(29768827-29768890)
chr1 (796-882)||(19565403-19565489)
chr1 (796-902)||(32550243-32550352)
[»] chr6 (1 HSPs)
chr6 (12-477)||(28849883-28850342)
[»] chr3 (3 HSPs)
chr3 (742-875)||(54162751-54162885)
chr3 (796-902)||(30260912-30261021)
chr3 (846-919)||(41296006-41296081)
[»] chr5 (4 HSPs)
chr5 (796-896)||(36275738-36275839)
chr5 (798-875)||(11742046-11742124)
chr5 (795-875)||(25897810-25897891)
chr5 (796-902)||(42393890-42393999)
[»] chr7 (5 HSPs)
chr7 (315-382)||(48074721-48074788)
chr7 (315-382)||(48091811-48091878)
chr7 (308-382)||(1808044-1808118)
chr7 (302-382)||(48101522-48101602)
chr7 (829-875)||(41743377-41743423)
[»] chr4 (5 HSPs)
chr4 (796-875)||(127846-127926)
chr4 (752-795)||(1581846-1581889)
chr4 (742-811)||(47687201-47687269)
chr4 (796-875)||(37995687-37995766)
chr4 (318-383)||(6342777-6342842)
[»] chr8 (1 HSPs)
chr8 (796-891)||(11661176-11661273)


Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 8 - 711
Target Start/End: Complemental strand, 35372605 - 35371904
Alignment:
Q  8 attttcccccatatggaattgattaccctacgcacatacccaccggacgtttctctaatggcctaaatattcctgacataatcagtatgtgtttaacttg 107  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35372605 attttcccccatatggaattgattaccctacacacaaacccaccggacgtttctctaatggcctaaatattcctgacataatcagtatgtgtttaacttg 35372506  T
Q  108 ttcttaacttatatacaagctagtgaaaatagtgcatgtaatttacttgcttaacaatggcaaattgttttggttatagtctctaatttgcatgcattgc 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  35372505 ttcttaacttaaatacaagctagtgaaaatagtgcatgtaatttacttgcttaacaatgacaaattgttttggttatagtctctaatgtgcatgcattgc 35372406  T
Q  208 ttaaagatgagatttgcttttatgaaatggttaaattgcaggtgagcaacttggtttagaacagactctcccttatttgagtcccttactaattggtgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  35372405 ttaaagatgagatttgcttttatgaaatggttaaattgcaggtgagcaacttggtttagaacagactctcccttatttgagtcccttgctacttggtgaa 35372306  T
Q  308 aaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagtttagttagttgttaatgttataaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35372305 aaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagtttagttagttgttattgttataaat 35372206  T
Q  408 atgactgattagttttgttataggaggacaaaattgctagtgacgtgaatcaaactttgatcatccttttcaatattccctcggtgtcttaagaggcgga 507  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35372205 atgactggttagttttgttataggatgacgaaattgctagtgacgtgaatcaaactttgatcatccttttcaatattccctcggtgtctcaagaggcgga 35372106  T
Q  508 tccatgactattttttgtgtgattaaaaataatagtgtcaaaacaattgtccaatgaaattaaatactatgagggagtttgttttggtgacacgcaaatt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||| |||||||| ||||||    
T  35372105 tccatgactattttttgtgtgattaaaaataatagtgtcaaaacaattgtccaattaaattaaatactatggggacgtttgtttcggtgacacacaaatt 35372006  T
Q  608 atacccaggaataacttacccagaaataaaaatatatgaaaattccattcttgaatatatttttatttaaaaagtgtttggcaaataagttagcatttct 707  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| ||||| ||    
T  35372005 atacccaggaataacttacccgaaaataaaa--atatgaaaattccattcctggatatatttttatttaaaaagtgtttgacaaataagttggcattcct 35371908  T
Q  708 gaaa 711  Q
    ||||    
T  35371907 gaaa 35371904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 35378248 - 35377879
Alignment:
Q  12 tcccccatatggaattgattaccctacgcacatacccaccggacgtttctctaatggcctaaatattcctgacataatcagtatgtgtttaacttgttct 111  Q
    |||||||||||| ||||||| ||||||||||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||| |    
T  35378248 tcccccatatggcattgatttccctacgcacaaacctactggacgtttctctaatggcctaaacattcctgatataatcagtatgagtttaatttgttat 35378149  T
Q  112 taacttatatacaagctagtgaaaatagtgcatgtaatttacttgcttaacaatggcaaattgttttggttatagtctctaatttgcatgcattgcttaa 211  Q
    || ||||  ||| ||||||||||||||||  ||||||||||||||||||||||||   ||| |||| |||| |||| ||| ||||||||||||||| |||    
T  35378148 tagcttaattactagctagtgaaaatagtatatgtaatttacttgcttaacaatgttgaatcgttt-ggttctagt-tctcatttgcatgcattgcataa 35378051  T
Q  212 agatgagatttgcttttatgaaatggttaaattgcaggtgagcaacttggtttagaacagactctcccttatttgagtcccttactaattggtgaaaaac 311  Q
    ||  | | |||| | || |||||| |||||||||||||||||  ||||||||||||||  ||||| ||||||||||||||||| |||||||| |||||||    
T  35378050 agtagggttttgatattgtgaaattgttaaattgcaggtgagagacttggtttagaaccaactcttccttatttgagtcccttgctaattggcgaaaaac 35377951  T
Q  312 ttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagtt 383  Q
    |||||||||||||||||||||| || |||||  |||||||||| |||||||| ||| |||||||||||||||    
T  35377950 ttttagttggtgccaattttgcatccgcgggtattggaattctcaatgatactggatttcaatttgtaagtt 35377879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 744 - 995
Target Start/End: Complemental strand, 35371720 - 35371464
Alignment:
Q  744 tatgtaggatttcatgggaatgcacattcccaccttctcacatggaaataaaggaagttacttcattcctatgaacgtctatactcaggaatatattttc 843  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  35371720 tatgtaggatttcatgggaatgcacattcccactttctcacatgggaataaaggaaggtacttcattcccaggaacgtctatactcaggaatatattttc 35371621  T
Q  844 aaaaccttataacaaacatgtgtataatcattttctag-catgtattt-caggaatgtcatctctaaactggaaacaacacccctctatata-taattca 940  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||| |||||||   ||||||||||| |||||||    
T  35371620 aaaaccttataacaaacatgggtataatcattctctagccatgtatttccaagaatgtcatctttaaacttgaaacaaacaccctctatatattaattca 35371521  T
Q  941 ttcaaattgtgaac-aatcttctctccttctactgtgcagat-ctctcgtctcccac 995  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  35371520 ttcaaattgtgaacaaatcttctctccttctactgtccagatcctctcgtctcccac 35371464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 176 - 382
Target Start/End: Complemental strand, 35359172 - 35358962
Alignment:
Q  176 tttggttatagtctctaatttgcatgcattgcttaaa----gatgagatttgcttttatgaaatggttaaattgcaggtgagcaacttggtttagaacag 271  Q
    |||| ||||| ||||| |||||||| |||| ||||||    |||||  |||| | || ||||||| ||||||||||||||||  ||||||||||||||      
T  35359172 tttgattatattctctcatttgcatacatttcttaaattaagatgaattttgatgttgtgaaatgattaaattgcaggtgagagacttggtttagaacca 35359073  T
Q  272 actctcccttatttgagtcccttactaattggtgaaaaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattc 371  Q
     |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||| |||    
T  35359072 tctcttccttatttgagtcccttattagttggtgaaaaacttttagttggtgccaattttgcatcagcaggtgttggaattctcaatgataccggatttc 35358973  T
Q  372 aatttgtaagt 382  Q
    |||||||||||    
T  35358972 aatttgtaagt 35358962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 35359319 - 35359226
Alignment:
Q  16 ccatatggaattgattaccctacgcacatacccaccggacgtttctctaatggcctaaatattcctgacataatcagtatgtgtttaacttgtt 109  Q
    |||||||| ||||| | |||||| |||  |||||| |||||||| |||||||||||||||||||||||| |||  |||||||| |||| |||||    
T  35359319 ccatatggcattgacttccctacacacgaacccactggacgtttttctaatggcctaaatattcctgacctaactagtatgtgcttaatttgtt 35359226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 796 - 876
Target Start/End: Original strand, 21620278 - 21620359
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcattt 876  Q
    ||||||||||  ||||||| |||| | |||||||||||||| | |||||  ||||| |||||||||||| ||||||||||||    
T  21620278 ggaagttactctattcctaggaacctttatactcaggaatatttttttctcaacctcataacaaacatgggtataatcattt 21620359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 35355033 - 35354973
Alignment:
Q  319 tggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgta 379  Q
    ||||||||| ||||||||||| ||| |||||||||| ||||| || ||| |||||||||||    
T  35355033 tggtgccaactttgcttctgccggcattggaattctcaatgacactggatttcaatttgta 35354973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 29768890 - 29768827
Alignment:
Q  317 gttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaa 380  Q
    ||||| |||||||||||||| || ||  |||||||||||||||| || || |||||||||||||    
T  29768890 gttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa 29768827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 882
Target Start/End: Original strand, 19565403 - 19565489
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcattttctagc 882  Q
    ||||||||||  ||||| | |||| | ||| | ||||||||| |||||  ||||| |||||||||||| |||||||||||| |||||    
T  19565403 ggaagttactctattcccacgaacctttatgcccaggaatattttttctcaacctcataacaaacatgggtataatcatttcctagc 19565489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 902
Target Start/End: Complemental strand, 32550352 - 32550243
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattt-ca 892  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||| ||||||| |||||||||||  |||| ||||||||| ||    
T  32550352 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataataaacatgggtataatcattccctagccatgtatttcca 32550253  T
Q  893 ggaatgtcat 902  Q
    ||||||||||    
T  32550252 ggaatgtcat 32550243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 28849883 - 28850342
Alignment:
Q  12 tcccccatatggaattgattaccctacgcacatacccaccggacgtttctctaatggcctaaatattcctgacataatcagtatgtgttta-------ac 104  Q
    ||||| |||||  ||| ||| |||||| |||| || ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||       |     
T  28849883 tcccctatatgacattaatttccctacacacaaactcaccgaacgtttctctaatggcctaaacattcatgacataatcagtatgtgtttatgaattaat 28849982  T
Q  105 ttgttcttaacttatatacaagctagtgaaaatagtgcatgtaatttacttgcttaacaatggcaaattgttttggttatagtctctaatttgcatgcat 204  Q
    || || ||| ||||    ||||||||||||||| ||  |||||||||| ||||||||||||| | |||||||||| || ||||||||||||||||||| |    
T  28849983 ttattattagctta----caagctagtgaaaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctt 28850078  T
Q  205 tgcttaaagatgagatttgcttttatgaaatggttaaattgcaggtgagcaacttggtttagaacagactctcccttatttgagtcccttactaattggt 304  Q
    |||||||||||||| |||| | || ||||||||||||||||||||||         | |||||||  | ||| ||||||||||||||||| |||||||||    
T  28850079 tgcttaaagatgagttttgatattgtgaaatggttaaattgcaggtg---------gattagaaccaaatcttccttatttgagtcccttgctaattggt 28850169  T
Q  305 gaaaaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagtttagttagttgttaatgttata 404  Q
    |||||  |||||||||||||||||||||| |||| |||| ||| ||||||||||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  28850170 gaaaattttttagttggtgccaattttgcatctgtgggcattgtaattcttaatgataccggttatcaatctgtaagtttagttagttgttaatgttata 28850269  T
Q  405 aatatgactgattagttttgttataggaggacaaaattgctagtgacgtgaatcaaactttgatcatcctttt 477  Q
    |||||||||| ||| |||||||||||||||| |||| || ||||||| |||||||||| ||||||||||||||    
T  28850270 aatatgactggttacttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcctttt 28850342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 742 - 875
Target Start/End: Complemental strand, 54162885 - 54162751
Alignment:
Q  742 tctatgtaggatttcatgggaatgcacattcccaccttctcacatggaaataaaggaagttacttcattcctatgaacgtctatactcaggaata-tatt 840  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||| | |||| | | |||  ||||||| | ||    
T  54162885 tctatgtaggatttcatgggaatgcacattcccatcttttcacatgggaataagggaagttacttcattcccaggaacctttgtacctaggaatattttt 54162786  T
Q  841 ttcaaaaccttataacaaacatgtgtataatcatt 875  Q
    |||   ||||||||||||||||| |||||||||||    
T  54162785 ttctcgaccttataacaaacatgggtataatcatt 54162751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 796 - 902
Target Start/End: Original strand, 30260912 - 30261021
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattt-ca 892  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||| ||    
T  30260912 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtatttcca 30261011  T
Q  893 ggaatgtcat 902  Q
    ||||||||||    
T  30261012 ggaatgtcat 30261021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 919
Target Start/End: Original strand, 41296006 - 41296081
Alignment:
Q  846 aaccttataacaaacatgtgtataatcattttctag-catgtattt-caggaatgtcatctctaaactggaaacaa 919  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||||| | |||||  |||||||    
T  41296006 aaccttataacaaacatgagtataatcattctctagtcatgtatttccaagaatgtcatttttaaacatgaaacaa 41296081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 796 - 896
Target Start/End: Original strand, 36275738 - 36275839
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcattttctagc-atgtatttcagg 894  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||||  ||||| ||||||||||||||||||||||||  ||||| ||||||||||||    
T  36275738 ggaagttactccattccgaggaacctttatacccaggaatattttttctcaacctcataacaaacatgtgtataatcattccctagctatgtatttcagg 36275837  T
Q  895 aa 896  Q
    ||    
T  36275838 aa 36275839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 798 - 875
Target Start/End: Original strand, 11742046 - 11742124
Alignment:
Q  798 aagttacttcattcctatgaa-cgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcatt 875  Q
    ||||||||||||||| ||||| | | ||||| ||||||||| |||||  ||||| |||||||||||| |||||||||||    
T  11742046 aagttacttcattcccatgaatcttttatacccaggaatattttttctcaacctcataacaaacatgggtataatcatt 11742124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 795 - 875
Target Start/End: Complemental strand, 25897891 - 25897810
Alignment:
Q  795 aggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcatt 875  Q
    ||||||||||| |||||||| |||| | ||||| |||||||| | |||||  ||||| |||||||||||| |||||||||||    
T  25897891 aggaagttactccattcctaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcatt 25897810  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 902
Target Start/End: Complemental strand, 42393999 - 42393890
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcattttctag-catgtatt-tca 892  Q
    ||||||||||| ||||| | |||| | |||||||||||||| | |||||  ||||| |||| ||||||| |||||||||||  |||| |||||||| ||     
T  42393999 ggaagttacttaattcccaggaacctttatactcaggaatatttttttctcaacctcataataaacatgggtataatcattccctagccatgtattctcg 42393900  T
Q  893 ggaatgtcat 902  Q
    ||||||||||    
T  42393899 ggaatgtcat 42393890  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 48074721 - 48074788
Alignment:
Q  315 tagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagt 382  Q
    |||||||||||||||| |||||||| ||  |||||||||| |||||||| ||||||||||||||||||    
T  48074721 tagttggtgccaatttcgcttctgctggaattggaattctcaatgatactggaattcaatttgtaagt 48074788  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 48091811 - 48091878
Alignment:
Q  315 tagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagt 382  Q
    |||||||||||||||||||||| || ||| |||||||||| |||||||| ||||| || |||||||||    
T  48091811 tagttggtgccaattttgcttccgctggcattggaattctcaatgataccggaatccagtttgtaagt 48091878  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 1808044 - 1808118
Alignment:
Q  308 aaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagt 382  Q
    |||||| || ||||||||||||||| ||| || ||  ||||||| ||||||||||| ||| ||||||||||||||    
T  1808044 aaacttctaattggtgccaattttggttcagctggaattggaatccttaatgataccggagttcaatttgtaagt 1808118  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 48101522 - 48101602
Alignment:
Q  302 ggtgaaaaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagt 382  Q
    |||||||| ||||||| ||| |||||||||||||| || ||  |||| ||||| || ||||| ||| ||||||||||||||    
T  48101522 ggtgaaaagcttttagctggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagt 48101602  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 829 - 875
Target Start/End: Original strand, 41743377 - 41743423
Alignment:
Q  829 caggaatatattttcaaaaccttataacaaacatgtgtataatcatt 875  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||||    
T  41743377 caggaatattttttctcaacctcataacaaacatgtgtataatcatt 41743423  T

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Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 796 - 875
Target Start/End: Complemental strand, 127926 - 127846
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcatt 875  Q
    ||||||||||||||||| |||||| | |||||||||||||| | |||||  ||||| |||||||||||| |||||||||||    
T  127926 ggaagttacttcattcccatgaacctttatactcaggaatatttttttctcaacctcataacaaacatgagtataatcatt 127846  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 752 - 795
Target Start/End: Complemental strand, 1581889 - 1581846
Alignment:
Q  752 atttcatgggaatgcacattcccaccttctcacatggaaataaa 795  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  1581889 atttcatgagaatgcacattctcaccttctcacatggaaataaa 1581846  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 742 - 811
Target Start/End: Complemental strand, 47687269 - 47687201
Alignment:
Q  742 tctatgtaggatttcatgggaatgcacattcccaccttctcacatggaaataaaggaagttacttcattc 811  Q
    |||||||||||||| ||||| ||||||||| |||||||||| ||||  ||||| |||||||| |||||||    
T  47687269 tctatgtaggattttatggg-atgcacatttccaccttctcgcatgagaataatggaagttatttcattc 47687201  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 875
Target Start/End: Original strand, 37995687 - 37995766
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcatt 875  Q
    |||||||||| |||||| | |||| | ||||| || |||||| |||||  ||||| |||||||||||| |||||||||||    
T  37995687 ggaagttactccattccaaggaacctttatacccatgaatattttttctcaacctcataacaaacatgggtataatcatt 37995766  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 6342842 - 6342777
Alignment:
Q  318 ttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagtt 383  Q
    ||||||| || ||||||||||| ||  |||||||||| ||||| || ||| |||||||||||||||    
T  6342842 ttggtgctaactttgcttctgctgggattggaattctcaatgacactggagttcaatttgtaagtt 6342777  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 891
Target Start/End: Complemental strand, 11661273 - 11661176
Alignment:
Q  796 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtatttc 891  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||||    
T  11661273 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtatttc 11661176  T

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