View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379-Insertion-5 (Length: 720)

Name: NF3379-Insertion-5
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379-Insertion-5
NF3379-Insertion-5
[»] scaffold0477 (2 HSPs)
scaffold0477 (436-720)||(2149-2433)
scaffold0477 (321-441)||(1057-1171)
[»] chr6 (2 HSPs)
chr6 (436-720)||(4651132-4651416)
chr6 (321-441)||(4650040-4650154)
[»] chr5 (2 HSPs)
chr5 (436-710)||(19082740-19083014)
chr5 (607-710)||(6531811-6531914)
[»] chr4 (3 HSPs)
chr4 (436-710)||(36757904-36758178)
chr4 (384-441)||(47503648-47503705)
chr4 (400-441)||(28336564-28336605)
[»] chr2 (2 HSPs)
chr2 (436-710)||(16148524-16148798)
chr2 (165-216)||(9071924-9071975)
[»] chr3 (2 HSPs)
chr3 (436-710)||(40109047-40109321)
chr3 (358-441)||(11483846-11483929)
[»] chr1 (3 HSPs)
chr1 (436-710)||(23303263-23303537)
chr1 (334-441)||(49129959-49130066)
chr1 (620-704)||(15014917-15015001)


Alignment Details
Target: scaffold0477 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 436 - 720
Target Start/End: Original strand, 2149 - 2433
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2149 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttatttcaactggtctttgaaatttatcacgacacc 2248  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  2249 aacgtaatggcaagtaacttattggaatctcaaatcaatctttatgaaggaatattgtcaatacatgacaacgaaaaataccccaaaactcaaaatgctt 2348  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcacttctacatga 720  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2349 ggaactgaaaccaaccacatcaccatcccataagactttatgcttttgtgaatgttgctcattgtaatatttcacttctacatga 2433  T

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Target: scaffold0477; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 321 - 441
Target Start/End: Original strand, 1057 - 1171
Alignment:
Q  321 aacacacaccagcatttaatgagtcccc-attagcctgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaat 419  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||       ||||||||| ||||    
T  1057 aacacacaccagcatttaatgagtcccccattagcttgcaaagcactctttggttaagtactttagagggaaattagca-------tagggctaaacaat 1149  T
Q  420 tgcttgacctaattagttttta 441  Q
    ||||| |||||||||| |||||    
T  1150 tgctttacctaattagctttta 1171  T

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Target: chr6 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 436 - 720
Target Start/End: Original strand, 4651132 - 4651416
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4651132 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttatttcaactggtctttgaaatttatcacgacacc 4651231  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  4651232 aacgtaatggcaagtaacttattggaatctcaaatcaatctttatgaaggaatattgtcaatacatgacaacgaaaaataccccaaaactcaaaatgctt 4651331  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcacttctacatga 720  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4651332 ggaactgaaaccaaccacatcaccatcccataagactttatgcttttgtgaatgttgctcattgtaatatttcacttctacatga 4651416  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 321 - 441
Target Start/End: Original strand, 4650040 - 4650154
Alignment:
Q  321 aacacacaccagcatttaatgagtcccc-attagcctgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaat 419  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||       ||||||||| ||||    
T  4650040 aacacacaccagcatttaatgagtcccccattagcttgcaaagcactctttggttaagtactttagagggaaattagca-------tagggctaaacaat 4650132  T
Q  420 tgcttgacctaattagttttta 441  Q
    ||||| |||||||||| |||||    
T  4650133 tgctttacctaattagctttta 4650154  T

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Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 436 - 710
Target Start/End: Original strand, 19082740 - 19083014
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  19082740 tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 19082839  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19082840 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 19082939  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcac 710  Q
    | ||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19082940 gcaactacaactaacaacatcaccatcacataagactttatgcttttgtgaatgttgctccttgtaatatttcac 19083014  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 607 - 710
Target Start/End: Complemental strand, 6531914 - 6531811
Alignment:
Q  607 caaagaataccccaaaactcaaaatgcttggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatt 706  Q
    ||||||||||||||||||||||||||||   ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  6531914 caaagaataccccaaaactcaaaatgctcacaactacaaccaacaacatcacaatcccataagactttatgcttttgtgaatgttgctccttgtaatatt 6531815  T
Q  707 tcac 710  Q
    ||||    
T  6531814 tcac 6531811  T

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Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 436 - 710
Target Start/End: Original strand, 36757904 - 36758178
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  36757904 tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 36758003  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36758004 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 36758103  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcac 710  Q
    | ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  36758104 gcaactacaaccaaccacatcaccatcccataagactttatgcttttgtgaatgttgctccttgcaatatttcac 36758178  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 47503705 - 47503648
Alignment:
Q  384 ggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagttttta 441  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||    
T  47503705 ggagggaaattatcatagcaattagggttaagcaattgcttgacttaattagctttta 47503648  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 28336564 - 28336605
Alignment:
Q  400 agcaattagggctaagcaattgcttgacctaattagttttta 441  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  28336564 agcaattagggttaagcaattgcttgacctaattagctttta 28336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 436 - 710
Target Start/End: Original strand, 16148524 - 16148798
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    |||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  16148524 tttttaattaagtccactgtattctccacattctcaataggccctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 16148623  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16148624 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 16148723  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcac 710  Q
    | ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  16148724 gcaactacaaccaaccacatcaccatcccataagactttatgcttttgtgaatgttgctccttgtaatatttcac 16148798  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 9071975 - 9071924
Alignment:
Q  165 tgctccaagctttatgctttgtcctttgtacaggttacgcgcattacagaac 216  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||| ||||||    
T  9071975 tgctccaagctttatgccctgtcctttgtacagcttacgcgaatttcagaac 9071924  T

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Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 436 - 710
Target Start/End: Original strand, 40109047 - 40109321
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  40109047 tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 40109146  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40109147 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaagaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 40109246  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcac 710  Q
    | | ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  40109247 gcagctacaaccaaccacatcaccatcccataagactttatgcttttgtgaatgttgctccttgtaatatttcac 40109321  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 11483846 - 11483929
Alignment:
Q  358 caaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagttttta 441  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11483846 caaaacactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagctttta 11483929  T

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Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 436 - 710
Target Start/End: Complemental strand, 23303537 - 23303263
Alignment:
Q  436 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttggaatttatcacgacacc 535  Q
    ||||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  23303537 tttttaattaagtctactgtattctccatattctcaataggccctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 23303438  T
Q  536 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 635  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  23303437 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaatgaatattgtcaatacatgatgacaaagaataccccaaaactcaaagtgctt 23303338  T
Q  636 ggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaatatttcac 710  Q
    | | ||| ||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  23303337 gcatctacaactaactacatcaccatctcattagactttatgcttttgtgaatgttgctccttgtaatatttcac 23303263  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 49129959 - 49130066
Alignment:
Q  334 atttaatgagtccccattagcctgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaatt 433  Q
    ||||||||||| ||||||||| ||||| ||||||||||||| |||  || |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49129959 atttaatgagttcccattagcttgcaatgcactctttggtttagtgtttaggagggaaattagcatagtaattagggctaagcaattgcttgacctaatt 49130058  T
Q  434 agttttta 441  Q
    || |||||    
T  49130059 agctttta 49130066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 620 - 704
Target Start/End: Complemental strand, 15015001 - 15014917
Alignment:
Q  620 aaaactcaaaatgcttggaactaaaaccaaccacatcacaatcacataagactttatgcttttgtgaatgttgctcattgtaata 704  Q
    |||||||||||||||| |||||| | |||||| |||||| ||| ||||||||||| |||||| |||||| |||||  ||||||||    
T  15015001 aaaactcaaaatgcttagaactacatccaaccgcatcaccatcccataagactttgtgctttagtgaatcttgcttcttgtaata 15014917  T

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