View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-6 (Length: 757)
Name: NF3379-Insertion-6
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 85 - 380
Target Start/End: Original strand, 21542649 - 21542945
Alignment:
| Q |
85 |
tatcacatatacaacattagactttaattagattaagtcaaaaggcaattcaatgaatagttctgccatcaagccacttatagaatgacataattagttg |
184 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
21542649 |
tatcacatatacaacattatactttaattagattaagtcaaaaggcaattcaatgaatagttatgccatcaagccacttatagaatgacctaattagttg |
21542748 |
T |
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| Q |
185 |
acaacnnnnnnntaacatgacataattagtctcaacttgagctcctttaagctgatgtccctgaacaaatagcataaaataaacaccagttccat-aaat |
283 |
Q |
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||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21542749 |
acaacaaaaaaatagcatgacataattagtctctacttgagctcctttaagctgatttccctgaacaaatagcataaaataaacaccagttccataaaat |
21542848 |
T |
|
| Q |
284 |
atgcatacacaacaaatggacaaaatttacaatcaaaaaccactcaattccctacaaatttctaaccttagatgcagataaacaaagttgataaaaa |
380 |
Q |
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| T |
21542849 |
atgtatacacaacaaatggacaaaatttacaatcaaaaacctctcaattccctgcaaatttccaacattaaatgcagataaacaaagttgataaaaa |
21542945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 617 - 757
Target Start/End: Complemental strand, 4437573 - 4437433
Alignment:
| Q |
617 |
aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctctgcattgaaccg |
716 |
Q |
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| T |
4437573 |
aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctatgcattgaaccg |
4437474 |
T |
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| Q |
717 |
gacaccctttgcagtcgtagaattgcatcctccacaccata |
757 |
Q |
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| T |
4437473 |
gacaccctttgcagtcgtagaattgcatcctccacaccata |
4437433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 8e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 377 - 609
Target Start/End: Original strand, 8631740 - 8631982
Alignment:
| Q |
377 |
aaaataaggagatactagacttttcactaatatagatgaagattgtttttgaacaaattatttttaaattgctagttgcgactaacatgtatgacattta |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
8631740 |
aaaataaggagatactagacttttcactaatatagatgaagactgtttttgaacaaattatttttaaattgctagttacgactaacatgtatgatattta |
8631839 |
T |
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| Q |
477 |
tattatattcgcaataagacaatcgaatat----------aacaaaataaatttatcataacttttcactaatataagattttatcttacaaaagtagtc |
566 |
Q |
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| T |
8631840 |
tattatattcgcaataagacaatcaaatataatggaatgaaacaaaataaatttatcacaacttttcactaatataagattttatcttacaaaagtagtc |
8631939 |
T |
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| Q |
567 |
taagttataagcttttgttggatggggtaataggaacttgatc |
609 |
Q |
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| T |
8631940 |
taagttataagtttttgctggatggggtaataggaacttgatc |
8631982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 617 - 757
Target Start/End: Original strand, 42078120 - 42078270
Alignment:
| Q |
617 |
aaaataatttgccgctgtagccataataaacattagatgcttcgcc----------acatacctttgtagagtagtaattcccaacttgcttcttctctg |
706 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42078120 |
aaaataatttgtcgctgtagccataataaacattagatgctttgcactctacttcaacatacctttgtagagtagtaattcccaacttgcttcttctctg |
42078219 |
T |
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| Q |
707 |
cattgaaccggacaccctttgcagtcgtagaattgcatcctccacaccata |
757 |
Q |
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| T |
42078220 |
cattgaaccggacaccctttgcaatcatagaattgcatcctccgcaccata |
42078270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 617 - 757
Target Start/End: Original strand, 46593265 - 46593405
Alignment:
| Q |
617 |
aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctctgcattgaaccg |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46593265 |
aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctctgcattgaaccg |
46593364 |
T |
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| Q |
717 |
gacaccctttgcagtcgtagaattgcatcctccacaccata |
757 |
Q |
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| T |
46593365 |
gacaccctttgcagtcgtagaattgcatcctccacaccata |
46593405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 46673457 - 46673531
Alignment:
| Q |
408 |
atagatgaagattgtttttgaacaaattatttttaaattgctagttgcgactaacatgtatgacatttatattat |
482 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
46673457 |
atagatgaagattgtttttggacaaattatttttaaattgctagttgtgactaacatgtaagacatttatattat |
46673531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 9e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 617 - 757
Target Start/End: Original strand, 37717587 - 37717727
Alignment:
| Q |
617 |
aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctctgcattgaaccg |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37717587 |
aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctctgcattgaaccg |
37717686 |
T |
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| Q |
717 |
gacaccctttgcagtcgtagaattgcatcctccacaccata |
757 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
37717687 |
aacaccctttgcactcgtagaattgcatcctccacaccata |
37717727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 469 - 609
Target Start/End: Complemental strand, 37609285 - 37609136
Alignment:
| Q |
469 |
gacatttatattatattcgcaataagacaatcgaatataa----------caaaataaatttatcataacttttcactaatataagattttatcttacaa |
558 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37609285 |
gacatttatattatattcgcaataagacaatcaaatataatggaatgaaacaaaataaatttatcacaacttttcactaatataagattttatcttacaa |
37609186 |
T |
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| Q |
559 |
aagtagtctaagttataagcttttgttggatggggtaataggaacttgatc |
609 |
Q |
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|| |||||||||||| ||| ||||| ||||||||||||||||||||||||| |
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| T |
37609185 |
aa-tagtctaagttaaaagtttttgctggatggggtaataggaacttgatc |
37609136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 406 - 508
Target Start/End: Complemental strand, 72842 - 72741
Alignment:
| Q |
406 |
atatagatgaagattgtttttgaacaaattatttttaaattgctagttgcgactaacatgtatgacatttatattatattcgcaataagacaatcgaata |
505 |
Q |
| |
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||||||||||||||| |||| ||||||| || ||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
72842 |
atatagatgaagattagttttaaacaaatgatctttaaattgttagttgctactaacatgtatgacatttaccttatattcacaataaga-aatcgaata |
72744 |
T |
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| Q |
506 |
taa |
508 |
Q |
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||| |
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| T |
72743 |
taa |
72741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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