View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-7 (Length: 610)
Name: NF3379-Insertion-7
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 7 - 610
Target Start/End: Original strand, 41129124 - 41129726
Alignment:
| Q |
7 |
aactatacctccataatatcctcaggtaacaaatatatggaacaaccaagctttcgtgcgacactgattatgtaagtggcattcaacttcttctcatcat |
106 |
Q |
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| T |
41129124 |
aactatacctccataatatcctcaggtaacagatatatggaacaaccaagctttcgtgcgacactgattatgtaagtggcgttcaacttcttctcatcat |
41129223 |
T |
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| Q |
107 |
ctataatttcaacaactttattaatccgtcgatttagtgcatgaactaaagaaatatatctaaaaattagccaaactcaatggtaactattggatttgca |
206 |
Q |
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| T |
41129224 |
ctataatttcaacaactttattaatccgtcgatttagtgcatgaactaaagaaatatatctaaaaattagccaaactcaatggtaactattggatttgca |
41129323 |
T |
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| Q |
207 |
aggaatcataccactttgaccctttgtcactaggttccagttgacaacccttggctctactgcactgagaagctccaggaagaagagtccacttgacaag |
306 |
Q |
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| T |
41129324 |
aggaatcataccactttgaccctttgtcactaggttccagttgacaacccttggctctactgcactgagaagctccaggaagaagagtccacttgacaag |
41129423 |
T |
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| Q |
307 |
ctcttatcctgtgcacaaaattgcatccaaaatagtgtaactaataaatcattgttttagtctactgttatcgtgcatttaacgggaaataaaccatann |
406 |
Q |
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| T |
41129424 |
ctcttatcctgtacacaaaattgcatccaaaatagtgtaactaataaatcattgttttagtctactgttatcgtgcatttaacaggaaataaaccatatt |
41129523 |
T |
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| Q |
407 |
nnnnncaaaaaaccttgaaactctgaatgcgagacgttcttccaatgctattcacttttctgtttgcccatttaagaatatcagcatcacttatctcctt |
506 |
Q |
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| T |
41129524 |
tttttc-aaaaaccttgaaactctgaatgcgagacgttcttccaatgctattcacttttctgtttgcccatttaagaatatcagcatcacttatctcctt |
41129622 |
T |
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| Q |
507 |
tccttgggaatgagatctcaaatttctcaacaattgaagcattgtgaatctcatcaactgccacaataaagctgaaaaatagaacaaatcttcttagatt |
606 |
Q |
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| T |
41129623 |
tccttgggaatgagatctcaaatttctcaacagttgaagcattgtgaatctcatcaactgccacaataaagctgaaaaatagaccaaatcttcttagatt |
41129722 |
T |
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| Q |
607 |
atga |
610 |
Q |
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|||| |
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| T |
41129723 |
atga |
41129726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 580
Target Start/End: Complemental strand, 42971210 - 42971087
Alignment:
| Q |
457 |
ttcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttccttgggaatgagatctcaaatttctcaacaattgaagcattgtgaatc |
556 |
Q |
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|||||||| |||| ||||| || || |||||||||||| | ||||| || |||||||| || |||||||| ||||||| | ||||||||| || |||| |
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| T |
42971210 |
ttcactttgttgttcgcccagtttagtatatcagcatcagtaatctctttaccttgggagtgtgatctcaagtttctcagaagttgaagcatggtaaatc |
42971111 |
T |
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| Q |
557 |
tcatcaactgccacaataaagctg |
580 |
Q |
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| T |
42971110 |
tcataagctgccacaaaaaagctg |
42971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 42971939 - 42971836
Alignment:
| Q |
12 |
tacctccataatatcctcaggtaacaaatatatggaacaaccaagctttcgtgcgacactgattatgtaagtggcattcaacttcttctcatcatctata |
111 |
Q |
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|||||| || || ||||||||||||| | |||||||| ||||| |||| || ||||||||||| || || | |||||||||||| ||||||||| || |
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| T |
42971939 |
tacctcgattatgtcctcaggtaacaggaaaatggaacatccaagttttctggcaacactgattatatatgttgaattcaacttcttgtcatcatctgta |
42971840 |
T |
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| Q |
112 |
attt |
115 |
Q |
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|||| |
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| T |
42971839 |
attt |
42971836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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