View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379-Insertion-8 (Length: 449)

Name: NF3379-Insertion-8
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379-Insertion-8
NF3379-Insertion-8
[»] chr8 (26 HSPs)
chr8 (8-226)||(17992651-17992868)
chr8 (205-438)||(4861955-4862192)
chr8 (263-438)||(17992872-17993052)
chr8 (282-438)||(16958548-16958708)
chr8 (282-438)||(22180599-22180759)
chr8 (270-438)||(22233855-22234026)
chr8 (277-438)||(11308992-11309156)
chr8 (282-438)||(8743288-8743447)
chr8 (282-438)||(9068172-9068331)
chr8 (282-438)||(16580083-16580242)
chr8 (282-438)||(28926148-28926307)
chr8 (270-438)||(22222669-22222842)
chr8 (270-438)||(22229011-22229184)
chr8 (284-438)||(22243248-22243406)
chr8 (282-419)||(41577354-41577495)
chr8 (282-438)||(12538155-12538315)
chr8 (282-438)||(28370091-28370250)
chr8 (282-419)||(27348024-27348165)
chr8 (282-438)||(3298800-3298959)
chr8 (274-438)||(1607273-1607443)
chr8 (284-438)||(13509964-13510121)
chr8 (284-438)||(13599494-13599651)
chr8 (282-438)||(24040714-24040873)
chr8 (282-368)||(34006838-34006924)
chr8 (322-376)||(21692205-21692258)
chr8 (372-438)||(34006776-34006845)
[»] chr3 (23 HSPs)
chr3 (205-438)||(23193844-23194080)
chr3 (281-438)||(45527644-45527804)
chr3 (282-438)||(20837092-20837251)
chr3 (282-438)||(3588398-3588557)
chr3 (282-438)||(7653227-7653386)
chr3 (282-438)||(27030688-27030847)
chr3 (282-438)||(33247986-33248146)
chr3 (282-438)||(36469440-36469598)
chr3 (282-438)||(8615501-8615660)
chr3 (282-438)||(10386075-10386234)
chr3 (282-438)||(22097665-22097824)
chr3 (282-411)||(27850581-27850713)
chr3 (282-438)||(9989394-9989553)
chr3 (282-438)||(37471691-37471850)
chr3 (282-438)||(52308090-52308249)
chr3 (282-438)||(48168198-48168357)
chr3 (267-438)||(1232495-1232675)
chr3 (282-388)||(20963711-20963817)
chr3 (267-438)||(2357143-2357318)
chr3 (282-392)||(23385394-23385504)
chr3 (282-438)||(26335115-26335264)
chr3 (311-438)||(4743005-4743135)
chr3 (149-192)||(1232748-1232791)
[»] chr7 (25 HSPs)
chr7 (281-438)||(2797567-2797728)
chr7 (282-438)||(31878599-31878757)
chr7 (282-438)||(12090465-12090624)
chr7 (282-438)||(2477656-2477816)
chr7 (282-438)||(12183864-12184023)
chr7 (282-438)||(12190841-12191000)
chr7 (284-438)||(22909118-22909275)
chr7 (282-438)||(2631394-2631553)
chr7 (282-438)||(10346310-10346469)
chr7 (282-436)||(31664501-31664658)
chr7 (282-419)||(8107911-8108052)
chr7 (282-438)||(22818410-22818569)
chr7 (282-438)||(31158281-31158440)
chr7 (282-438)||(3544884-3545044)
chr7 (282-438)||(23795092-23795251)
chr7 (282-419)||(19472286-19472427)
chr7 (282-438)||(22321805-22321964)
chr7 (282-438)||(24482742-24482903)
chr7 (282-438)||(45500715-45500874)
chr7 (274-438)||(29032788-29032955)
chr7 (284-438)||(1274588-1274745)
chr7 (282-435)||(1953955-1954111)
chr7 (282-368)||(6172525-6172611)
chr7 (282-345)||(33160180-33160243)
chr7 (363-438)||(19472194-19472272)
[»] chr2 (21 HSPs)
chr2 (277-438)||(13230346-13230510)
chr2 (282-438)||(36040267-36040426)
chr2 (282-438)||(36667873-36668033)
chr2 (282-438)||(42702211-42702370)
chr2 (282-438)||(27257383-27257542)
chr2 (282-438)||(28457881-28458041)
chr2 (282-419)||(29223713-29223854)
chr2 (282-419)||(29337012-29337153)
chr2 (282-438)||(5784529-5784688)
chr2 (282-438)||(14700639-14700799)
chr2 (282-438)||(23925036-23925195)
chr2 (282-438)||(32522927-32523086)
chr2 (282-438)||(36557526-36557686)
chr2 (286-438)||(43991533-43991682)
chr2 (324-438)||(21160005-21160123)
chr2 (282-438)||(24663135-24663295)
chr2 (104-192)||(21159783-21159872)
chr2 (277-351)||(8687768-8687842)
chr2 (324-438)||(9787110-9787228)
chr2 (322-376)||(31758312-31758365)
chr2 (274-346)||(492729-492800)
[»] chr6 (26 HSPs)
chr6 (284-438)||(25976950-25977106)
chr6 (282-438)||(14479558-14479717)
chr6 (284-438)||(34006502-34006659)
chr6 (247-438)||(14270634-14270829)
chr6 (282-438)||(24878863-24879022)
chr6 (282-438)||(3539045-3539204)
chr6 (282-438)||(24161260-24161419)
chr6 (282-438)||(26515433-26515592)
chr6 (282-438)||(32806767-32806926)
chr6 (282-438)||(5989007-5989166)
chr6 (270-438)||(1454782-1454953)
chr6 (270-438)||(1466474-1466645)
chr6 (282-438)||(9932810-9932969)
chr6 (282-438)||(21596532-21596695)
chr6 (274-438)||(21631170-21631339)
chr6 (282-366)||(26510392-26510476)
chr6 (282-443)||(26604337-26604502)
chr6 (323-438)||(15642455-15642574)
chr6 (333-438)||(9518448-9518557)
chr6 (270-438)||(13173828-13173991)
chr6 (270-438)||(13182361-13182524)
chr6 (395-438)||(34913803-34913846)
chr6 (284-392)||(34913449-34913556)
chr6 (400-438)||(6868057-6868095)
chr6 (322-376)||(14354983-14355036)
chr6 (274-438)||(32821792-32821957)
[»] chr1 (21 HSPs)
chr1 (281-438)||(11738802-11738962)
chr1 (282-438)||(432345-432504)
chr1 (282-438)||(44505274-44505434)
chr1 (282-410)||(9667727-9667859)
chr1 (282-438)||(13218050-13218209)
chr1 (282-438)||(38121937-38122096)
chr1 (282-419)||(39001204-39001345)
chr1 (282-438)||(12168221-12168380)
chr1 (282-438)||(49249070-49249229)
chr1 (282-419)||(33492221-33492362)
chr1 (282-438)||(16832787-16832946)
chr1 (284-438)||(8996266-8996423)
chr1 (282-438)||(16129657-16129816)
chr1 (282-438)||(41000108-41000267)
chr1 (274-438)||(15161093-15161260)
chr1 (299-439)||(9268650-9268794)
chr1 (303-438)||(16130232-16130370)
chr1 (282-438)||(13830286-13830445)
chr1 (274-346)||(36080210-36080281)
chr1 (335-438)||(6244252-6244359)
chr1 (335-438)||(39454154-39454261)
[»] chr5 (16 HSPs)
chr5 (282-438)||(27167102-27167261)
chr5 (282-438)||(34869750-34869910)
chr5 (282-438)||(7314963-7315122)
chr5 (282-438)||(9404422-9404581)
chr5 (282-438)||(11723281-11723440)
chr5 (282-438)||(11766753-11766912)
chr5 (282-438)||(34456295-34456454)
chr5 (282-438)||(14344467-14344626)
chr5 (282-438)||(16904614-16904773)
chr5 (282-438)||(30607081-30607240)
chr5 (282-412)||(33434601-33434735)
chr5 (282-410)||(31845978-31846110)
chr5 (282-438)||(24835733-24835892)
chr5 (282-438)||(6269888-6270047)
chr5 (275-438)||(39656042-39656208)
chr5 (316-438)||(37251909-37252034)
[»] chr4 (22 HSPs)
chr4 (282-438)||(19247832-19247991)
chr4 (282-438)||(30218395-30218555)
chr4 (267-437)||(33110708-33110883)
chr4 (284-438)||(1187965-1188122)
chr4 (276-438)||(53895371-53895537)
chr4 (282-438)||(4839141-4839300)
chr4 (282-438)||(20948743-20948903)
chr4 (282-438)||(21677672-21677831)
chr4 (282-438)||(42532892-42533051)
chr4 (282-438)||(26069723-26069885)
chr4 (282-438)||(55326772-55326933)
chr4 (282-419)||(323436-323577)
chr4 (282-443)||(40995549-40995713)
chr4 (282-438)||(22047679-22047838)
chr4 (286-438)||(46692041-46692196)
chr4 (282-368)||(52618512-52618598)
chr4 (282-436)||(44432060-44432217)
chr4 (282-438)||(5273567-5273715)
chr4 (282-392)||(26373683-26373793)
chr4 (282-372)||(35416757-35416847)
chr4 (283-438)||(6639976-6640135)
chr4 (274-392)||(8894921-8895039)
[»] scaffold0019 (1 HSPs)
scaffold0019 (282-435)||(116575-116731)
[»] scaffold0147 (1 HSPs)
scaffold0147 (282-438)||(6730-6889)
[»] scaffold0336 (1 HSPs)
scaffold0336 (282-438)||(8740-8899)
[»] scaffold0159 (1 HSPs)
scaffold0159 (282-438)||(28904-29063)
[»] scaffold0059 (1 HSPs)
scaffold0059 (282-435)||(16480-16637)
[»] scaffold1494 (1 HSPs)
scaffold1494 (282-438)||(1562-1721)
[»] scaffold0076 (1 HSPs)
scaffold0076 (282-438)||(25655-25814)
[»] scaffold0505 (1 HSPs)
scaffold0505 (275-438)||(988-1154)
[»] scaffold0298 (2 HSPs)
scaffold0298 (284-438)||(12208-12363)
scaffold0298 (284-438)||(15978-16133)
[»] scaffold0124 (1 HSPs)
scaffold0124 (284-438)||(12195-12350)
[»] scaffold0091 (1 HSPs)
scaffold0091 (274-438)||(14177-14342)
[»] scaffold0014 (1 HSPs)
scaffold0014 (282-438)||(76456-76615)
[»] scaffold1832 (1 HSPs)
scaffold1832 (282-411)||(1-134)
[»] scaffold0160 (1 HSPs)
scaffold0160 (274-438)||(35287-35453)
[»] scaffold0458 (1 HSPs)
scaffold0458 (335-438)||(9457-9564)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 17992651 - 17992868
Alignment:
Q  8 atatgagccacacgtgcagcagacttgggaattagaagaaaaacaaggaaagaaaatgatgccacgccacactgccatgtgctagaatttataaattggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17992651 atatgagccacacgtgcagcagacttgggaattagaagaaaaacaaggaaagaaaatgatgccacaccacactgccatgtgctagaatttataaattggg 17992750  T
Q  108 cttttgatccaagtggacttagctgacccgtaaacaacaaatggaggagcctgagagcataaaagaaaggagccgcacaggaactnnnnnnnnnggaggg 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  17992751 cttttgacccaagtggacttagctgacccgtaaacaacaaatggaggagcctgagagcataaaagaaaggagccgcacaggaact-aagaaaaaggaggg 17992849  T
Q  208 atttcacgttttggaataa 226  Q
    |||||||||||||||||||    
T  17992850 atttcacgttttggaataa 17992868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 205 - 438
Target Start/End: Complemental strand, 4862192 - 4861955
Alignment:
Q  205 gggatttcacgttttggaataacaggagcacactttgggagaggagcaacatcacatttttggagagatg-catttctagagagaaacacaaggcaaggt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  4862192 gggatttcacgttttggaataacaggagcacactttgggagagaagcaacatcatatttttggagagatggcatttttagagagaaacacaaggtaaggt 4862093  T
Q  304 agttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacata 399  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    | |||||    
T  4862092 agttaagagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacata 4861993  T
Q  400 tgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||||| ||| | |||||||||||||||||    
T  4861992 tgtagctacatctactctt-gtggttttgaggtattcaa 4861955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 263 - 438
Target Start/End: Original strand, 17992872 - 17993052
Alignment:
Q  263 tttggagagatg-catttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaat 361  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17992872 tttggagagatggcatttctagagagaaacacaaggcaaggtagttaagagtagattcaatccaagattcattgagacatcatgaatcttgtcatggaat 17992971  T
Q  362 tttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
     ||||||||||||||||||||||||||||||    | ||||||||||||||||||||||||| || |||||||||||||||    
T  17992972 cttcatcttttcttcatcctttgcaaagctatcatagacatatgtagctacatctacccttgtggattttgaggtattcaa 17993052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 16958548 - 16958708
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||||||  |||||||||||||| ||| | |||||||| |||||||||||||||||||    
T  16958548 agagagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgagtctaggcatggaatcttcatcttttcttcatcct 16958647  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  16958648 ttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 16958708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 22180599 - 22180759
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||| || |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  22180599 agagagaaacaaaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcctttcttcatcct 22180698  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| |||| ||||||||||||||||||    
T  22180699 ttgcaaagctatcatagacatatgtagctacatctactcttgtgggttttgaggtattcaa 22180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 270 - 438
Target Start/End: Complemental strand, 22234026 - 22233855
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||| ||| | |||||||||||| ||||||| |||| ||||| |||| | ||||||||  |||||||||||||||||| | |||||||| |||||||    
T  22234026 agatgcaattccatagagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatct 22233928  T
Q  370 tttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||||||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  22233927 tttcttcatcctttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 22233855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 277 - 438
Target Start/End: Complemental strand, 11309156 - 11308992
Alignment:
Q  277 tttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttc 376  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| | || | |||||||    
T  11309156 tttctagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatctccaccctttcttc 11309057  T
Q  377 atcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  11309056 atcctttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 11308992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 8743447 - 8743288
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  8743447 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 8743348  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  8743347 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 8743288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 9068331 - 9068172
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  9068331 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 9068232  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  9068231 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 9068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 16580083 - 16580242
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  16580083 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 16580182  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  16580183 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 16580242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 28926307 - 28926148
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  28926307 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 28926208  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  28926207 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 28926148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 270 - 438
Target Start/End: Complemental strand, 22222842 - 22222669
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||| ||| | |||||||||||| ||||||| |||| ||||| |||| | ||||||||  |||||||||||||||||| | |||||||| |||||||    
T  22222842 agatgcaattccatagagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatct 22222744  T
Q  370 --tttcttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
      ||||||||||||||||||||||| ||    |||||||||||||||||||||||| ||||||||||||||||||    
T  22222743 cttttcttcatcctttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 22222669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 270 - 438
Target Start/End: Complemental strand, 22229184 - 22229011
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||| ||| | |||||||||||| ||||||| |||| ||||| |||| | ||||||||  |||||||||||||||||| | |||||||| |||||||    
T  22229184 agatgcaattccatagagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatct 22229086  T
Q  370 --tttcttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
      ||||||||||||||||||||||| ||    |||||||||||||||||||||||| ||||||||||||||||||    
T  22229085 cttttcttcatcctttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 22229011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 22243406 - 22243248
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    ||||||||||||  |||||||||||  |||| |||||| ||||||||  ||||||||||||| |||| | ||| |||| |||||||||||||||||||||    
T  22243406 agagaaacacaaaacaaggtagttagaagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 22243307  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | ||||||||||||||||||||| ||| ||||||||||||||||||    
T  22243306 gcaaagctatcatagacatatgtagctacatctacctttgtgggttttgaggtattcaa 22243248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 41577495 - 41577354
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  41577495 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 41577396  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | |||||||||||||||||||| ||||    
T  41577395 ttgcaaagctatcatagacatatgtagctacatctactcttg 41577354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 12538155 - 12538315
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||| || || |||||| | | ||||  |||||||||||||||||||||||| |||| ||||||| ||||||||| |    
T  12538155 agagagaaacacaaatcaaggtagttaggattagattcaagctatgatttgttgagacatcatgaatcttgtcattgaatcttcatctcttcttcatcat 12538254  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||| |||||||||||||| ||||||||||||||||||    
T  12538255 ttgcaaagctatcttagacatatgtaggtacatctacccttgtgggttttgaggtattcaa 12538315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 28370091 - 28370250
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  28370091 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 28370190  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||| ||| ||| |  ||||||||||||||||    
T  28370191 ttgcaaagctatcatagacatatgtagctacatttactctt-gtagttttgaggtattcaa 28370250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 27348024 - 27348165
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  27348024 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 27348123  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||| ||    | |||||||||||||||||||| ||||    
T  27348124 ttgcaaagttatcatagacatatgtagctacatctactcttg 27348165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 3298800 - 3298959
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| |||| | |||||||||||     
T  3298800 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatcca 3298899  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  3298900 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 3298959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 274 - 438
Target Start/End: Original strand, 1607273 - 1607443
Alignment:
Q  274 gcatttctaga--gagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttt 371  Q
    |||||||||||  ||||||||||| ||||||  |||||||||||||||   | ||||||  |||||||||||||||||||  |||||||| |||||||||    
T  1607273 gcatttctagatagagaaacacaaagcaagggtgttaagagtatattcttcctaagatttgttgagacatcatgaatcttagcatggaatcttcatcttt 1607372  T
Q  372 tcttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
      ||||||||||||||||||  ||    |||||||||||||||||||||||| || |||||||||||||||    
T  1607373 ctttcatcctttgcaaagctttcataggcatatgtagctacatctacccttgtggattttgaggtattcaa 1607443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 13509964 - 13510121
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||| | ||||  |||| |||||| | ||||||  ||||||||||||| |||| | ||| |||| |||||||||||||||||||||    
T  13509964 agagaaacacaaagcaagat-gttagaagtagattcaacctaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 13510062  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  13510063 gcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 13510121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 13599494 - 13599651
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||| | ||||  |||| |||||| | ||||||  ||||||||||||| |||| | ||| |||| |||||||||||||||||||||    
T  13599494 agagaaacacaaagcaagat-gttagaagtagattcaacctaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 13599592  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  13599593 gcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 13599651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 24040714 - 24040873
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||| ||  ||| |||||||  |||| |||||| ||||||||  ||||||||||||| |||||||||| |||| ||||| | ||| |||||||    
T  24040714 agagagaaacataaatcaatgtagttagaagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatcct 24040813  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||| |||||| |||   |||||||||||||||||    
T  24040814 ttgcaaagctatcatagacatatgtagctatatctactctt-atggttttgaggtattcaa 24040873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 34006924 - 34006838
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatc 368  Q
    |||||||||||||| |||||||||||| ||||| ||| || ||||||||  ||||||||||||| ||||||||||||||| ||||||    
T  34006924 agagagaaacacaaagcaaggtagttaggagtagattaaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatc 34006838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 21692205 - 21692258
Alignment:
Q  322 tccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttc 376  Q
    |||||||||  |||||||||||||||||||||||| |||| ||||||||||||||    
T  21692205 tccaagatttgttgagacatcatgaatcttgtcat-gaatcttcatcttttcttc 21692258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 34006845 - 34006776
Alignment:
Q  372 tcttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||||||||||| ||    ||||||||||||||||||| ||| |  ||||||||||||||||    
T  34006845 tcttcatcctttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 34006776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 205 - 438
Target Start/End: Original strand, 23193844 - 23194080
Alignment:
Q  205 gggatttcacgttttggaataacaggagcacactttgggagaggagcaacatcacatttttggagagatg-catttctagagagaaacacaaggcaaggt 303  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  23193844 gggatttcacgttttggaataacaggagcac-ctttgggagagaagcaacatcatatttttggagagatggcatttttagagagaaacacaaggcaaggt 23193942  T
Q  304 agttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacata 399  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    | |||||    
T  23193943 agttaagagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcctttgcaaa-ctatcagagacata 23194041  T
Q  400 tgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23194042 tgtagctacatctacccttgtgggttttgaggtattcaa 23194080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 281 - 438
Target Start/End: Original strand, 45527644 - 45527804
Alignment:
Q  281 tagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcc 380  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  45527644 tagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcatcatcc 45527743  T
Q  381 tttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||    | |||||| ||||||||||||| ||| | |||||||||||||||||    
T  45527744 tttgcaaagctatcatagacatatctagctacatctactctt-gtggttttgaggtattcaa 45527804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 20837092 - 20837251
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  20837092 agagagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcct 20837191  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||| |  ||| | |||||||||||||||||    
T  20837192 ttgcaaagctatcatagacatatgtagctacatccattctt-gtggttttgaggtattcaa 20837251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 3588398 - 3588557
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  3588398 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 3588497  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  3588498 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 3588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 7653386 - 7653227
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  7653386 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 7653287  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  7653286 ttgcaaagctatcttagacatatgtagctacatctactctt-gtagttttgaggtattcaa 7653227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 27030847 - 27030688
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  27030847 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 27030748  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  27030747 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 27030688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 33247986 - 33248146
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  |||||||||||||||| | | ||| |||| ||||||| || ||||||||    
T  33247986 agagagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatgaatttaggcattgaatcttcatctctttttcatcct 33248085  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||| |||||||||||| ||||||||||||||||||    
T  33248086 ttgcaaagctatcatagacatatgtagctgcatctacccttgtgggttttgaggtattcaa 33248146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 36469598 - 36469440
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||| ||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| |||||||||||||||||||    
T  36469598 agagagaaacacaag-caaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcatcttttcttcatcct 36469500  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||| |||| ||| | |||||||||||||||||    
T  36469499 ttgcaaagctatcatagacatatgtagctacaactactctt-gtggttttgaggtattcaa 36469440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 8615501 - 8615660
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||| ||||||||| |||| | ||||||||||||    
T  8615501 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatcct 8615600  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  8615601 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 8615660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 10386234 - 10386075
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||| | ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  10386234 agagagaaacacaaagcaaggtagttaggagtagattcgagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 10386135  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  10386134 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 10386075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 22097665 - 22097824
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| | |||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  22097665 agagagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 22097764  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  22097765 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 22097824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 411
Target Start/End: Complemental strand, 27850713 - 27850581
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||| ||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  27850713 agagagaaacacaag-caaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcatttcttcatcct 27850615  T
Q  382 ttgcaaagcta----acacatatgtagctacatc 411  Q
    |||||||||||    | |||||||||||||||||    
T  27850614 ttgcaaagctatcatagacatatgtagctacatc 27850581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 9989394 - 9989553
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| |||| | |||||||| |||    
T  9989394 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcaacct 9989493  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  9989494 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 9989553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 37471850 - 37471691
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||| ||||||| ||||| |||||| |||| |||  |||||||  |||| ||||||||||||||| |||||||||||||||||||    
T  37471850 agagagaaacacaaagcaaagtagttaggagtagattcaagccaaaatttgttgagacgacatggatcttgtcatggaatcttcatcttttcttcatcct 37471751  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||| |||||| ||| | |||||||| ||||||||    
T  37471750 ttgcaaagctatcatagacatatgtagctatatctactctt-gtggttttgatgtattcaa 37471691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 52308249 - 52308090
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||| | |||| |||  || |||||||||| ||||||||||||||| |||| | ||||||||||||    
T  52308249 agagagaaacacaaagcaaggtagttaggagtagattctagccaatatttgtttagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 52308150  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  52308149 ttgcaaagctatcttagacatatgtagctacatctactctt-gtagttttgaggtattcaa 52308090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 48168357 - 48168198
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||| | |||||||||||| ||||| |||||| ||||||||  ||||||||||| | ||||| ||||||||| | ||||||  |||||||||    
T  48168357 agagagaaacacgaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcagggatcttatcatggaatctgcatcttcacttcatcct 48168258  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
     ||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  48168257 atgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 48168198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 438
Target Start/End: Complemental strand, 1232675 - 1232495
Alignment:
Q  267 gagagatg-catttctagagagaaacacaaggcaaggta----gttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaat 361  Q
    |||||||| ||||||||||||||||||||| ||||  ||    |||| ||||| ||||    |||||||  |||||||||||||||||| | |||| |||    
T  1232675 gagagatgacatttctagagagaaacacaaagcaaaataaggtgttaggagtagattcttatcaagatttgttgagacatcatgaatctaggcatgaaat 1232576  T
Q  362 tttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
     || |||| ||||||||||||||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  1232575 ctttatctcttcttcatcctttgcaaagctattatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 1232495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 388
Target Start/End: Complemental strand, 20963817 - 20963711
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||| |||||| |||||||| |||||||| |    
T  20963817 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcgtggaatcttcatcttctcttcatcat 20963718  T
Q  382 ttgcaaa 388  Q
    |||||||    
T  20963717 ttgcaaa 20963711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 438
Target Start/End: Original strand, 2357143 - 2357318
Alignment:
Q  267 gagagatg-catttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttc 365  Q
    |||||||| |||||||| |||||||||||| ||||| | |||| ||||| |||||| ||||||||  |||||||||||||| ||| | |||| ||| |||    
T  2357143 gagagatgacatttctatagagaaacacaaagcaagat-gttaggagtagattcaacccaagatttgttgagacatcatgagtctaggcatgaaatcttc 2357241  T
Q  366 atcttttcttcatcctttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||  |||||||||||| |||||     | ||||||||||||||||||| | ||| ||||||||||||||||||    
T  2357242 atctttctttcatcctttgccaagcttgtatagacatatgtagctacatctaacattgtgggttttgaggtattcaa 2357318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 23385394 - 23385504
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||| || |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| | || | ||||||||||||    
T  23385394 agagagaaacaaaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatctacaccctttcttcatcct 23385493  T
Q  382 ttgcaaagcta 392  Q
    |||||||||||    
T  23385494 ttgcaaagcta 23385504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 26335115 - 26335264
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||| |||||||| |||||||||||||||||| |||||| ||||||||  |||||||||||||| ||| | |||| |||           |||||||||    
T  26335115 agagaaaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgagtctaggcatgaaat-----------cttcatcct 26335203  T
Q  382 ttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||| ||    |||||||||||||||||||||||| ||||||||||||||||||    
T  26335204 ttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 26335264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 438
Target Start/End: Complemental strand, 4743135 - 4743005
Alignment:
Q  311 agtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacatatgtagct 406  Q
    |||| |||||| ||||||||  |||||| |||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||    | ||||||||||||    
T  4743135 agtagattcaagccaagatttgttgagagatcatggatcttgtcatgaaatcttcatcttttcttcatcgtttgcaaagctatcatagacatatgtagct 4743036  T
Q  407 acatctacccttgggggttttgaggtattcaa 438  Q
    |||||||| ||| |  ||||||||||||||||    
T  4743035 acatctactctt-gtagttttgaggtattcaa 4743005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 1232791 - 1232748
Alignment:
Q  149 tggaggagcctgagagcataaaagaaaggagccgcacaggaact 192  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  1232791 tggaggagccttagagcataaaacaaaggagccgcacaggaact 1232748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 281 - 438
Target Start/End: Complemental strand, 2797728 - 2797567
Alignment:
Q  281 tagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcc 380  Q
    |||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2797728 tagagagaaacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcc 2797629  T
Q  381 tttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  2797628 tttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 2797567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 31878599 - 31878757
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  31878599 agagagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatctttt-ttcatcct 31878697  T
Q  382 ttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||| ||    || |||||||||||||||||||| ||| | |||||||||||||||||    
T  31878698 ttgcaaaactatcaaagacatatgtagctacatctactctt-gtggttttgaggtattcaa 31878757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 12090624 - 12090465
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  12090624 agagagaaacacaaagcaaggtagttaggagtaaattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcct 12090525  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||  ||| | |||||||||||||||||    
T  12090524 ttgcaaagctatcatagacatatgtagctacatctaatctt-gtggttttgaggtattcaa 12090465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 2477656 - 2477816
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||| | ||| |||| ||||||||||| |||||||    
T  2477656 agagagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcctcatcct 2477755  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||| |||||||||||| ||||||||||||||||||    
T  2477756 ttgcaaagctatcatagacatatgtagctccatctacccttgtgggttttgaggtattcaa 2477816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 12183864 - 12184023
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  12183864 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatagatcttgtcatggaatcttcatcttttcttcatcct 12183963  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||||| | || | |||||||||||||||||    
T  12183964 ttgcaaagctatcatagacatatgtagctacatcta-cttttgtggttttgaggtattcaa 12184023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 12190841 - 12191000
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  12190841 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcct 12190940  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||  ||||||||| ||| | |||||||||||||||||    
T  12190941 ttgcaaagctatcatagacatatgtatttacatctactctt-gtggttttgaggtattcaa 12191000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 22909118 - 22909275
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||||| ||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||||    
T  22909118 agagaaacacaaagcaaggt-gttaggagtagattcaatctaagatttgttgagacatcatggatctagtcattgaatcttcatcttttcttcatccttt 22909216  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | |||||||||||||||||||| |||| ||||||||||||||||||    
T  22909217 gcaaagctatcatagacatatgtagctacatctactcttgtgggttttgaggtattcaa 22909275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 2631394 - 2631553
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  2631394 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 2631493  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  2631494 ttgcaaagctatcataaacatatgtagctacatctactctt-gtagttttgaggtattcaa 2631553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 10346469 - 10346310
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  10346469 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 10346370  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  10346369 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 10346310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 282 - 436
Target Start/End: Complemental strand, 31664658 - 31664501
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  31664658 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttaatcct 31664559  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattc 436  Q
    || ||||||||    | |||||| ||||||||||||| ||| | |||||||||||||||    
T  31664558 ttacaaagctatcataaacatatctagctacatctactctt-gtggttttgaggtattc 31664501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 8108052 - 8107911
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  8108052 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 8107953  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | |||||||||||||||||||| ||||    
T  8107952 ttgcaaagctatcatagacatatgtagctacatctactcttg 8107911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 22818410 - 22818569
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||| ||| ||||||||||||||||| |    
T  22818410 agagagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatcat 22818509  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||| |  ||| | |||||||||||||||||    
T  22818510 ttgcaaagctatcatagacatatgtagctacatccattctt-gtggttttgaggtattcaa 22818569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 31158440 - 31158281
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||| ||||||||||| |||| | ||||||||||||    
T  31158440 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcatgtcatggaatcttcaccctttcttcatcct 31158341  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  31158340 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 31158281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 3545044 - 3544884
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||| || | |||||||||| ||||| |||||| ||||||||  ||||||||||||| |||| | |||  ||| ||||||| |||| ||||||    
T  3545044 agagagaaacaaaaagaaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcattaaatcttcatctcttctccatcct 3544945  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  3544944 ttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 3544884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 23795092 - 23795251
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||| ||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  23795092 agagagaaactcaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 23795191  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||| ||||||| ||| |  ||||||||||||||||    
T  23795192 ttgcaaagctattatagacatatgtagctccatctactctt-gtagttttgaggtattcaa 23795251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 19472427 - 19472286
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||| |||||| |||||| ||||| ||||||    
T  19472427 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcttggaatcttcatcctttctgcatcct 19472328  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    ||| |||||||    | |||||||||||||||||||| ||||    
T  19472327 ttgtaaagctatcatagacatatgtagctacatctactcttg 19472286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 22321964 - 22321805
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| |||| ||||| |||||| ||||| |||||| ||||||||  ||||||||||||| ||||| |||| |||| |||||| ||||||||||||    
T  22321964 agagagaaatacaaagcaagttagttaggagtagattcaagccaagatttgttgagacatcatggatcttttcattgaatcttcatcctttcttcatcct 22321865  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  22321864 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 22321805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 24482742 - 24482903
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||| ||||| ||||| ||  || ||||||||  ||||||||||||| |||| | ||| |||| ||||||| |||||||||||    
T  24482742 agagagaaacacaaagcaagggagttatgagtagatcaaacccaagatttgttgagacatcatggatctagacattgaatcttcatctcttcttcatcct 24482841  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggtttt-gaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||||||||||| || |||| |||||||||||    
T  24482842 ttgcaaagctatcatagacatatgtagctacatctacccttgtggattttagaggtattcaa 24482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 45500874 - 45500715
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||  |||||||||| |||| ||||| | ||||||||| |    
T  45500874 agagagaaacacaaagcaaggtagttatgagtagattcaagccaagatttgttgagacatcatagatcttgtcattgaatcttcatttcttcttcatcat 45500775  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||| || |||||| ||| | |||||||||||||||||    
T  45500774 ttgcaaagctatcacagacatatgtagttatatctactctt-gtggttttgaggtattcaa 45500715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 438
Target Start/End: Complemental strand, 29032955 - 29032788
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttc 373  Q
    ||||||||| |||||||||||| | ||||| |||| ||||| |||| || |||||||  |||||||||||||| ||| | |||||||| |||||||||      
T  29032955 gcatttctatagagaaacacaaagtaaggt-gttaggagtagattctattcaagatttgttgagacatcatgagtctagacatggaatcttcatctttct 29032857  T
Q  374 ttcatcctttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||| ||||| |||||     | ||||||||||||||||||| ||||| ||||||||||||||||||    
T  29032856 ttcatcatttgccaagcttgcatagacatatgtagctacatctaaccttgtgggttttgaggtattcaa 29032788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 1274588 - 1274745
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| | ||||| |||| ||||| ||| ||  |||||||  ||||||||||||| |||| | ||| |||| || |||| ||||||||||| |    
T  1274588 agagaaacacaaagtaaggt-gttatgagtagatttaactcaagatttgttgagacatcatggatctcggcattgaatctttatctcttcttcatcctat 1274686  T
Q  384 gcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||| ||    |||||||||||||||||||||||  ||||||||||||||||||    
T  1274687 gcaaagctatcatagacatatgtagctacatctacccttctgggttttgaggtattcaa 1274745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 435
Target Start/End: Original strand, 1953955 - 1954111
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||| ||||||| ||||| |||||| ||||||||  || |||||||||| |||||||||| |||| ||||  | |||||||||||    
T  1953955 agagagaaacacaaagcaatgtagttaggagtagattcaagccaagatttgttaagacatcatggatcttgtcattgaatcttcaattcttcttcatcct 1954054  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtatt 435  Q
    ||| |||||||    | ||||||||||||| ||||||  || | ||||||||||||||    
T  1954055 ttgaaaagctatcatagacatatgtagctatatctactatt-gtggttttgaggtatt 1954111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 6172525 - 6172611
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatc 368  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||  ||| ||||||||||| ||||||    
T  6172525 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatagatcctgtcatggaatcttcatc 6172611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 33160180 - 33160243
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatg 345  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  |||||||||||||    
T  33160180 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatg 33160243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 438
Target Start/End: Complemental strand, 19472272 - 19472194
Alignment:
Q  363 ttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||| ||||||||||||||| |||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  19472272 ttcatcctttcttcatcctttgtaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 19472194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 277 - 438
Target Start/End: Complemental strand, 13230510 - 13230346
Alignment:
Q  277 tttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttc 376  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13230510 tttctagagagaaacacaaagcaaggtagttatgagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttc 13230411  T
Q  377 atcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||| ||||||||    | |||||||||||||||||||| ||| | |||| ||||||||||||    
T  13230410 atcctttacaaagctatcatagacatatgtagctacatctactctt-gtggttctgaggtattcaa 13230346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 36040426 - 36040267
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  36040426 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcct 36040327  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  36040326 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 36040267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 36668033 - 36667873
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| | | || ||||||||  ||||||||||||| |||||||||| |||| ||||||| |||||||||||    
T  36668033 agagagaaacacaaagcaaggtagttaggagtagacttaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatctcttcttcatcct 36667934  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  36667933 ttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 36667873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 42702370 - 42702211
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  42702370 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcctcct 42702271  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  42702270 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 42702211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 27257383 - 27257542
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||  ||| | ||| || |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||    
T  27257383 agagagaaacacaaaacaaggtagtttggaggagatttaacccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttcttcatcct 27257482  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  27257483 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 27257542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 28458041 - 28457881
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| ||||||  |||||||  || |||||||||| |||| | ||| |||| |||||||||||||||||||    
T  28458041 agagagaaacacaaagcaaggtagttaggagtagattcaactcaagatttgttaagacatcatggatctaggcattgaatcttcatcttttcttcatcct 28457942  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||| ||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  28457941 ttgcaatgctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 28457881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 29223713 - 29223854
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  29223713 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 29223812  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | |||||||||||||||||||| ||||    
T  29223813 ttgcaaagctatcatagacatatgtagctacatctactcttg 29223854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 29337012 - 29337153
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  29337012 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 29337111  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | |||||||||||||||||||| ||||    
T  29337112 ttgcaaagctatcatagacatatgtagctacatctactcttg 29337153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 5784688 - 5784529
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||| ||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  5784688 agagagaaacacaaagcaaggaagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 5784589  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  5784588 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 5784529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 14700639 - 14700799
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||| |||||||| |||||||||||||||||| |||||| ||||||||  |||||||||| ||| ||| | || ||||  ||||| |||||||||||||    
T  14700639 agagaaaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcttgagtctaggcaaggaaacttcatattttcttcatcct 14700738  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||| |||||||||||||| ||||||||||||||||||    
T  14700739 ttgcaaagctatcatagacatatgtagttacatctacccttgtgggttttgaggtattcaa 14700799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 23925195 - 23925036
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| | ||||||  ||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  23925195 agagagaaacacaaagcaaggtagttaggagtagattcaagcgaagatttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatcct 23925096  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||| |||||||||| ||| |  ||||||||||||||||    
T  23925095 ttgcaaagctatcatagacatatgtatctacatctactctt-gttgttttgaggtattcaa 23925036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 32522927 - 32523086
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| |||||||| |||||||||||||| |||||||||| |||| ||||| | |||||| ||||    
T  32522927 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttattgagacatcatggatcttgtcattgaatcttcatttcttcttcgtcct 32523026  T
Q  382 ttgcaaagctaac----acatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||| |    |||||||||||||  ||||||||| | |||||||||||||||||    
T  32523027 ttgcaaagctatcatggacatatgtagctatttctaccctt-gtggttttgaggtattcaa 32523086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 36557686 - 36557526
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||  |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||| | |||  ||| |||||||||||||||||||    
T  36557686 agagagaaacacatagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcatttaatcttcatcttttcttcatcct 36557587  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||| |||||||||||||| || |||||||||||||||    
T  36557586 ttgcaaagctatcatagacatatgtaggtacatctacccttgtggattttgaggtattcaa 36557526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 286 - 438
Target Start/End: Original strand, 43991533 - 43991682
Alignment:
Q  286 agaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgc 385  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||||||      ||||||||||||||||||||    
T  43991533 agaaacacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgga------atcttttcttcatcctttgc 43991626  T
Q  386 aaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  43991627 aaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 43991682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 438
Target Start/End: Original strand, 21160005 - 21160123
Alignment:
Q  324 caagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagctaaca----catatgtagctacatctacccttg 419  Q
    |||||||  |||||||||||||||||| | |||| ||| ||||||| ||||||||| |||||||||||| ||    ||||||||||||||||||||||||    
T  21160005 caagatttgttgagacatcatgaatctaggcatgaaatcttcatctcttcttcatcttttgcaaagctatcatagacatatgtagctacatctacccttg 21160104  T
Q  420 ggggttttgaggtattcaa 438  Q
     ||||||||||||||||||    
T  21160105 tgggttttgaggtattcaa 21160123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 24663295 - 24663135
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||||| |||| |||||  ||||  ||||||||  |||||||||||||||||||  ||| |||| |||||||||  ||||||||    
T  24663295 agagagaaacacaaagcaaggttgttaggagtagtttcataccaagatttgttgagacatcatgaatcttagcattgaatcttcatctttctttcatcct 24663196  T
Q  382 ttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||| |||||     | |||||||||||||||||||| |||| | ||||||||||||||||    
T  24663195 ttgcgaagcttgcatagacatatgtagctacatctacgcttgtgagttttgaggtattcaa 24663135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 21159783 - 21159872
Alignment:
Q  104 tgggcttttgatccaagtggacttagctgacccgtaaacaacaaat-ggaggagcctgagagcataaaagaaaggagccgcacaggaact 192  Q
    ||||| ||||| |||| |||  |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  21159783 tgggcctttgacccaaatggcattagctgacccgtaaacaacaaattggaggagcctgagagcataaaacaaaggagccgcacaggaact 21159872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 8687842 - 8687768
Alignment:
Q  277 tttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatctt 351  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||    
T  8687842 tttctagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatctt 8687768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 438
Target Start/End: Complemental strand, 9787228 - 9787110
Alignment:
Q  324 caagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||  |||||| ||||||||||| | |||| ||| ||||| ||||||||||||||||||||||||    | |||||||||  || ||||||| |||    
T  9787228 caagatttgttgagatatcatgaatctaggcatgaaatcttcatattttcttcatcctttgcaaagctatcatagacatatgtaagtatatctaccattg 9787129  T
Q  420 ggggttttgaggtattcaa 438  Q
     ||||||||||||||||||    
T  9787128 tgggttttgaggtattcaa 9787110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 31758312 - 31758365
Alignment:
Q  322 tccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttc 376  Q
    |||||||||  |||||||||||||||||||||||| |||| ||||||||||||||    
T  31758312 tccaagatttgttgagacatcatgaatcttgtcat-gaatcttcatcttttcttc 31758365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 492729 - 492800
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatga 346  Q
    ||||||||||||||||||||||  |||||| |||| ||||| |||| | ||||||||  ||||||||||||||    
T  492729 gcatttctagagagaaacacaaatcaaggt-gttaggagtagattctacccaagatttgttgagacatcatga 492800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 25976950 - 25977106
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  25976950 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagattcattgagacatcatgaatcttgttatggaatcttcatcttttcttcat-cttt 25977047  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  25977048 gcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 25977106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 14479558 - 14479717
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14479558 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcct 14479657  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||| |||    | ||||||||||||| |||||| ||| | |||||||||||||||||    
T  14479658 ttgcaaatctatcatagacatatgtagctatatctactctt-gtggttttgaggtattcaa 14479717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 34006502 - 34006659
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  34006502 agagaaacacaaagcaaggtagttaggagtagattcaaaccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 34006601  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  34006602 gcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 34006659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 247 - 438
Target Start/End: Original strand, 14270634 - 14270829
Alignment:
Q  247 ggagcaacatcacatttttggagagatg-catttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatg 345  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||| |||||| ||||||||  ||||||||||||     
T  14270634 ggagcaatatcacatttttggagagatgacatttctagagagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttgttgagacatcata 14270732  T
Q  346 aatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
     |||| | ||  |||| ||||||||||||||||| |||||||| |||    | ||||||||||||| || |||||||| ||||||||||||||||||    
T  14270733 gatctaggcagtgaatcttcatcttttcttcatcttttgcaaaactatcatagacatatgtagctatatatacccttgtgggttttgaggtattcaa 14270829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 24878863 - 24879022
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||    
T  24878863 agagagaaacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttcttcatcct 24878962  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||| ||| ||| |  ||||||||||||||||    
T  24878963 ttgcaaagctatcatagacatatgtagctacatatactctt-gtagttttgaggtattcaa 24879022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 3539045 - 3539204
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  3539045 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 3539144  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  3539145 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 3539204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 24161419 - 24161260
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| | ||||||  ||||||||||||| ||||||||||||||| |||||||||||||||| ||    
T  24161419 agagagaaacacaaagcaaggtagttaggagtagattcaagcaaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcattct 24161320  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    | |||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  24161319 tggcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 24161260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 26515592 - 26515433
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  26515592 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 26515493  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  26515492 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 26515433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 32806926 - 32806767
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  32806926 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatcct 32806827  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||| ||||| |||| ||| | |||||||||||||||||    
T  32806826 ttgcaaagctatcatagacatatgtatctacacctactctt-gtggttttgaggtattcaa 32806767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 5989166 - 5989007
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||| | ||| |||| |||||||||| |||||| |    
T  5989166 agagagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttcatctttt-ttcatcat 5989068  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||| |||||||| ||||||||||||||||||    
T  5989067 ttgcaaagctatcatagacatatgtagctacatttacccttgtgggttttgaggtattcaa 5989007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 438
Target Start/End: Original strand, 1454782 - 1454953
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||||||||| |||||||||||| ||||||| |||| ||||| |||| | ||||||||  |||||||||||||| ||| | |||||||| |||||||    
T  1454782 agatgcatttctatagagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgagtctaggcatggaatcttcatct 1454880  T
Q  370 tttcttcatcctttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||  |||||||||||| |||||     | ||||||||| ||||||||||||||| ||||||||||||||||||    
T  1454881 ttctttcatcctttgccaagcttgcatagacatatgtaactacatctacccttgtgggttttgaggtattcaa 1454953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 438
Target Start/End: Original strand, 1466474 - 1466645
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||||||||| |||||||||||| ||||||| |||| ||||| |||| | ||||||||  |||||||||||||| ||| | |||||||| |||||||    
T  1466474 agatgcatttctatagagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgagtctaggcatggaatcttcatct 1466572  T
Q  370 tttcttcatcctttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||  |||||||||||| |||||     | ||||||||| ||||||||||||||| ||||||||||||||||||    
T  1466573 ttctttcatcctttgccaagcttgcatagacatatgtaactacatctacccttgtgggttttgaggtattcaa 1466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 9932969 - 9932810
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||| ||||| ||||||  |||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  9932969 agagagaaacacaaaacaaggtagttaggagtagattcaaggcaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 9932870  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  9932869 ttgcaaagctatcatatacatatgtagctacatctactctt-gtagttttgaggtattcaa 9932810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 21596695 - 21596532
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgt----catggaattttcatcttttcttca 377  Q
    |||||||||||||| ||| |||||||| ||||| |||||| ||||||||  ||||||||||||  |||||||    |||||||| |||||||||||||||    
T  21596695 agagagaaacacaaagcatggtagttaggagtagattcaagccaagatttgttgagacatcatagatcttgtcatgcatggaatcttcatcttttcttca 21596596  T
Q  378 tcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||||||    | |||||||||||||||||||  ||| | |||||||||||||||||    
T  21596595 tcctttgcaaagctatcatagacatatgtagctacatctaaactt-gtggttttgaggtattcaa 21596532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 438
Target Start/End: Original strand, 21631170 - 21631339
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttca--tcttt 371  Q
    |||||| |||||||||||| || |||||||||||||||||| ||| ||  |||||||  ||||||||||||| |||| | ||| |||| ||||  |||||    
T  21631170 gcatttttagagagaaacataaagcaaggtagttaagagtagatttaacacaagatttgttgagacatcatggatctagacatagaatcttcatctcttt 21631269  T
Q  372 tcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||| |||||||    | |||||||||| ||||||||| ||| | || ||||||||||||||    
T  21631270 tcttcatcctttgtaaagctatcatagacatatgtagttacatctactctt-gtggatttgaggtattcaa 21631339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 26510476 - 26510392
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttca 366  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| ||||    
T  26510476 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttca 26510392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 443
Target Start/End: Original strand, 26604337 - 26604502
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||||  ||||  |||| ||||   ||||||||  |||||||||||||||||||  |||||||| |||||||||  | |||| |    
T  26604337 agagagaaacacaaagcaagggtgttagaagtagattcttcccaagatttgttgagacatcatgaatcttagcatggaatcttcatctttcttccatctt 26604436  T
Q  382 ttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaacaaag 443  Q
    ||||||||||     | ||||||||||||||||||| ||||| |||| ||||||||||||| ||||    
T  26604437 ttgcaaagctttcatagacatatgtagctacatctatccttgtgggtattgaggtattcaaaaaag 26604502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 438
Target Start/End: Original strand, 15642455 - 15642574
Alignment:
Q  323 ccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagctaaca----catatgtagctacatctaccctt 418  Q
    ||||||||  |||||||||||||||||||  |||| ||| |||||||||  |||||||||||| |||||  ||    |||||||||||| ||||||||||    
T  15642455 ccaagatttgttgagacatcatgaatcttagcatgaaatcttcatctttctttcatcctttgctaagcttgcatagacatatgtagctaaatctaccctt 15642554  T
Q  419 gggggttttgaggtattcaa 438  Q
    | ||||||||||||||||||    
T  15642555 gtgggttttgaggtattcaa 15642574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 438
Target Start/End: Complemental strand, 9518557 - 9518448
Alignment:
Q  333 ttgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttg 428  Q
    |||||||||||||||| ||  |||| ||| |||||||||  |||||||||||| ||| |  ||    |||||||||||||||||||||||| ||||||||    
T  9518557 ttgagacatcatgaattttagcatgaaatcttcatctttctttcatcctttgccaagtttgcatagacatatgtagctacatctacccttgtgggttttg 9518458  T
Q  429 aggtattcaa 438  Q
    ||||||||||    
T  9518457 aggtattcaa 9518448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 438
Target Start/End: Complemental strand, 13173991 - 13173828
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||||||||| ||| |||||||| | ||||| |||| ||||| |||| | ||||||||  |||||| ||||||| ||  | |||||||| |||||||    
T  13173991 agatgcatttctatagaaaaacacaaagtaaggt-gttaggagtagattctacccaagatttgttgagatatcatgagtc--ggcatggaatcttcatct 13173895  T
Q  370 --tttcttcatcctttgcaaagctaacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
      ||||||||||||||||||||||| |    ||  |  |||||||||||||| | ||||||||||||||||    
T  13173894 cttttcttcatcctttgcaaagctatc----atagacatacatctacccttgtgagttttgaggtattcaa 13173828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 438
Target Start/End: Complemental strand, 13182524 - 13182361
Alignment:
Q  270 agatgcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatct 369  Q
    ||||||||||||| ||| |||||||| | ||||| |||| ||||| |||| | ||||||||  |||||| ||||||| ||  | |||||||| |||||||    
T  13182524 agatgcatttctatagaaaaacacaaagtaaggt-gttaggagtagattctacccaagatttgttgagatatcatgagtc--ggcatggaatcttcatct 13182428  T
Q  370 --tttcttcatcctttgcaaagctaacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
      ||||||||||||||||||||||| |    ||  |  |||||||||||||| | ||||||||||||||||    
T  13182427 cttttcttcatcctttgcaaagctatc----atagacatacatctacccttgtgagttttgaggtattcaa 13182361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 34913803 - 34913846
Alignment:
Q  395 acatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  34913803 acatatgtagctacatctacccttgtgggttttgaggtattcaa 34913846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 392
Target Start/End: Original strand, 34913449 - 34913556
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||| ||||||||  ||||||||| ||| || | | ||| |||| ||||||| ||| ||||||| |    
T  34913449 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttgttgagacattatggatttaggcattgaatcttcatctcttcatcatcctat 34913547  T
Q  384 gcaaagcta 392  Q
    |||||||||    
T  34913548 gcaaagcta 34913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 6868095 - 6868057
Alignment:
Q  400 tgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  6868095 tgtagctacatctacccttgtgggttttaaggtattcaa 6868057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 14355036 - 14354983
Alignment:
Q  322 tccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttc 376  Q
    |||||||||  |||||||||||||||||||||||  |||| ||||||||||||||    
T  14355036 tccaagatttgttgagacatcatgaatcttgtca-cgaatcttcatcttttcttc 14354983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 438
Target Start/End: Original strand, 32821792 - 32821957
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttc 373  Q
    ||||||| ||| ||||| | || |||||||| ||| || || |||||| ||||||||  |||| | |||||| ||||   ||| |||| ||||||| |||    
T  32821792 gcatttcaagatagaaatataaagcaaggta-ttaggaatagattcaacccaagatttgttgataaatcatggatctatgcattgaatcttcatctcttc 32821890  T
Q  374 ttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    | ||||||||  ||||||| ||    || ||||||||||||||||  ||| ||||||||||||||||||    
T  32821891 tccatccttttaaaagctatcatagacaaatgtagctacatctac--ttgtgggttttgaggtattcaa 32821957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 281 - 438
Target Start/End: Complemental strand, 11738962 - 11738802
Alignment:
Q  281 tagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcc 380  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||||||  |||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  11738962 tagagagaaacacaaagcaaggtagttaggagtaaattcaagccaagatttgttgacacatcatggatcttgtcatggaatcttcatcttttcttcatcc 11738863  T
Q  381 tttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  11738862 tttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 11738802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 432504 - 432345
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| ||||||||||||||||| ||||| | |||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  432504 agagagaaatacaaggcaaggtagttaggagtagactcaagccaagatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcct 432405  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||| |  ||| | |||||||||||||||||    
T  432404 ttgcaaagctatcatagacatatgtagctacatccattctt-gtggttttgaggtattcaa 432345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 44505434 - 44505274
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| |||| |||  ||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  44505434 agagagaaacacaaagcaaggtagttaggagtagattcaagccaaaatttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatcct 44505335  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||  |||| || |||||||||||||||    
T  44505334 ttgcaaagctatcatagacatatgtagctacatctaaacttgtggtttttgaggtattcaa 44505274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 410
Target Start/End: Complemental strand, 9667859 - 9667727
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  9667859 agagagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcct 9667760  T
Q  382 ttgcaaagcta----acacatatgtagctacat 410  Q
    |||||||||||    | ||||||||||||||||    
T  9667759 ttgcaaagctatcatagacatatgtagctacat 9667727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 13218209 - 13218050
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||||| |||| ||||| |||||| ||||||||  ||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  13218209 agagagaaacacaaagcaaggtggttaggagtagattcaagccaagatttgttgagacatcatggaacttgtcatggaatcttcatcttttcttcatcct 13218110  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||| ||||||    
T  13218109 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggcattcaa 13218050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 38122096 - 38121937
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  38122096 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 38121997  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  38121996 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 38121937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 39001345 - 39001204
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  39001345 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 39001246  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | |||||||||||||||||||| ||||    
T  39001245 ttgcaaagctatcatagacatatgtagctacatctactcttg 39001204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 12168380 - 12168221
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| | ||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  12168380 agagagaaacacaaagcaaggtagttaggtgtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccatttcttcatcct 12168281  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  12168280 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 12168221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 49249070 - 49249229
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| | |||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  49249070 agagagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 49249169  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  49249170 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 49249229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 33492362 - 33492221
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  33492362 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 33492263  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | ||||||||||| |||||||| ||||    
T  33492262 ttgcaaagctatcatagacatatgtagccacatctactcttg 33492221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 16832946 - 16832787
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| | |||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||| ||||| ||| |||||||||||||||||||    
T  16832946 agagagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatgaaatcttcatcttttcttcatcct 16832847  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | | ||||||||||| |||||| ||| | |||||||||||||||||    
T  16832846 ttgcaaagctatcatagatatatgtagctatatctactctt-gtggttttgaggtattcaa 16832787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 8996423 - 8996266
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||| ||||||||  ||| ||||||||| |||| | ||| |||| ||||||| |||||||||||||    
T  8996423 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttgttgcgacatcatggatctaggcattgaatcttcatctcttcttcatccttt 8996325  T
Q  384 gcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||    | ||||||||||||||||||||||||| ||||||||| ||||||||    
T  8996324 gcaaagctatcatagacatatgtagctacatctacccttgtgggttttgatgtattcaa 8996266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 16129657 - 16129816
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||| |||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| ||||| | ||||||||| |    
T  16129657 agagagaaacacaaagcaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatcat 16129756  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||| |||||| ||| | |||||||||||||||||    
T  16129757 ttgcaaagctatcatagacatatgtagctatatctactctt-gtggttttgaggtattcaa 16129816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 41000267 - 41000108
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| ||||| | ||| |||||||    
T  41000267 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatcct 41000168  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||| |||    | |||||||||| || |||||| ||| | |||||||||||||||||    
T  41000167 ttgcaaatctatcatagacatatgtagttatatctactctt-gtggttttgaggtattcaa 41000108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 438
Target Start/End: Original strand, 15161093 - 15161260
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttc 373  Q
    |||||||||||||||||||||| ||||| || ||| ||||| ||||   ||||||||  |||||||||||||||||||  | |||||| ||||| |||||    
T  15161093 gcatttctagagagaaacacaaagcaagata-ttaggagtagattcttcccaagatttgttgagacatcatgaatcttagcttggaatcttcatattttc 15161191  T
Q  374 ttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||| ||||||||||    | |||||||||| ||||||||| |||  ||||||| ||||||||||    
T  15161192 ttcatcctctgcaaagctatcatagacatatgtagttacatctactcttatgggttttaaggtattcaa 15161260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 439
Target Start/End: Original strand, 9268650 - 9268794
Alignment:
Q  299 aaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagct----aac 394  Q
    ||||| |||||||||| ||||   | || ||| ||||||||||||||| ||| | |||| ||| |||||||||  || ||||||||| || ||    ||     
T  9268650 aaggttgttaagagtagattcttcctaatatttattgagacatcatgagtctagacatgaaatcttcatctttcttttatcctttgccaaacttgcaaag 9268749  T
Q  395 acatatgtagctacatctacccttgggggttttgaggtattcaac 439  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  9268750 acatatgtagctacatctacccttgtgggttttgaggtattcaac 9268794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 438
Target Start/End: Original strand, 16130232 - 16130370
Alignment:
Q  303 tagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacat 398  Q
    |||||| ||||| ||||||  |||||||  ||||||||||||| |||||||||| |||| ||||| | ||||||||| ||||||||| ||    | ||||    
T  16130232 tagttaggagtagattcaagtcaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatcatttgcaaagttatcatagacat 16130331  T
Q  399 atgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||| |||||| ||| | | |||||||||||||||    
T  16130332 atgtagctatatctactctt-gtgattttgaggtattcaa 16130370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 13830286 - 13830445
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||||| | ||| |||| ||||| ||||   | ||||||  ||||||| |||||||||||  |||| ||| ||||| |||  ||||||||    
T  13830286 agagagaaacacaaggaagggt-gttaggagtagattcttcctaagatttgttgagacgtcatgaatcttagcatgaaatcttcatttttctttcatcct 13830384  T
Q  382 ttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||| |  ||    ||||||||||||||| |||||||| ||||||| ||||||||||    
T  13830385 ttgcaaagttttcatagacatatgtagctacatttacccttgtgggtttttaggtattcaa 13830445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 36080210 - 36080281
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatga 346  Q
    |||||||||||||||||||||| ||||||| |||| ||||| |||| |||||||| |  ||||||||||||||    
T  36080210 gcatttctagagagaaacacaaagcaaggt-gttaggagtagattctatccaagacttgttgagacatcatga 36080281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 6244252 - 6244359
Alignment:
Q  335 gagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta------acacatatgtagctacatctacccttgggggttttg 428  Q
    |||| ||||||||| |||||||||||| |||||| ||  | |||| ||||||||||||      | ||||||  ||||||||||||||||| ||||||||    
T  6244252 gagatatcatgaatattgtcatggaatcttcatccttcttccatcttttgcaaagctactatgaaaacatat--agctacatctacccttgtgggttttg 6244349  T
Q  429 aggtattcaa 438  Q
    ||||||||||    
T  6244350 aggtattcaa 6244359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 39454154 - 39454261
Alignment:
Q  335 gagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgag 430  Q
    |||| ||||||||||||   ||||||| |||||||||  | |||| ||||||||| ||    | |||||||||||||||||||| |||| || |||| ||    
T  39454154 gagatatcatgaatcttagtatggaatcttcatctttcttccatcttttgcaaagttatcatagacatatgtagctacatctacgcttgtggtttttaag 39454253  T
Q  431 gtattcaa 438  Q
    ||||||||    
T  39454254 gtattcaa 39454261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 27167261 - 27167102
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||| ||||||||| ||||||||||||||| |||||||||||||||||||    
T  27167261 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgggacatcatggatcttgtcatggaatcttcatcttttcttcatcct 27167162  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  27167161 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 27167102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 34869910 - 34869750
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| ||||||| || ||||| ||    
T  34869910 agagagaaacacaaaacaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatctcttattcattct 34869811  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||    
T  34869810 ttgcaaagctatcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 34869750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 7314963 - 7315122
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  7314963 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 7315062  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  7315063 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 7315122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 9404422 - 9404581
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  9404422 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 9404521  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  9404522 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 9404581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 11723440 - 11723281
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  11723440 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 11723341  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  11723340 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 11723281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 11766753 - 11766912
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  11766753 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 11766852  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  11766853 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 11766912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 34456295 - 34456454
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  34456295 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 34456394  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  34456395 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 34456454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 14344467 - 14344626
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||| ||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  14344467 agagagaaactcaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 14344566  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  14344567 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 14344626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 16904773 - 16904614
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| | ||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  16904773 agagagaaacacaaagcaaggtagttaggggtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 16904674  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  16904673 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 16904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 30607240 - 30607081
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| |||| |||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  30607240 agagagaaacacaaagcaaggtagttaggagtagattcaagccaatatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 30607141  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  30607140 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 30607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 282 - 412
Target Start/End: Original strand, 33434601 - 33434735
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  33434601 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 33434700  T
Q  382 ttgcaaagcta----acacatatgtagctacatct 412  Q
    |||||||||||    | ||||||||||||||||||    
T  33434701 ttgcaaagctatcatagacatatgtagctacatct 33434735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 410
Target Start/End: Original strand, 31845978 - 31846110
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  31845978 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 31846077  T
Q  382 ttgcaaagcta----acacatatgtagctacat 410  Q
    |||||||||||    | ||||||||||||||||    
T  31846078 ttgcaaagctatcatagacatatgtagctacat 31846110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 24835733 - 24835892
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||| ||||| ||||||  || ||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  24835733 agagagaaacacaaatcaaggtagttaggagtagattcaagtcaggatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 24835832  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  24835833 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 24835892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 6269888 - 6270047
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| | || ||||||| ||||| |||||| ||||||||  ||| |||| |||| ||||||||| ||||| ||||| |||||||||||||    
T  6269888 agagagaaacacaaagaaatgtagttatgagtagattcaagccaagatttgttgtgacaacatggatcttgtcaaggaatcttcatattttcttcatcct 6269987  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||| |||||| ||| | |||||||||||||||||    
T  6269988 ttgcaaagctatcatagacatatgtagctatatctactctt-gtggttttgaggtattcaa 6270047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 438
Target Start/End: Complemental strand, 39656208 - 39656042
Alignment:
Q  275 catttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttct 374  Q
    ||||||||||||||||||||| | ||||| |||| ||||| |||| |   ||||||  |||||||||||||||||| | |||| ||| |||||||||  |    
T  39656208 catttctagagagaaacacaacgtaaggt-gttaggagtagattctacaaaagatttgttgagacatcatgaatctaggcatgaaatcttcatctttctt 39656110  T
Q  375 tcatcctttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||  |||||    || ||||||||||||||||||||||||| ||||||||||||||||||    
T  39656109 tcatcctttgtcaagcttgcaaagacatatgtagctacatctacccttgtgggttttgaggtattcaa 39656042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 438
Target Start/End: Complemental strand, 37252034 - 37251909
Alignment:
Q  316 attcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagctaacaca----tatgtagctacatc 411  Q
    |||||| |||||||| ||||||||||||||| ||  |  ||||||| |||||||||||||||||||||||||||||| || |    ||||||||||||||    
T  37252034 attcaacccaagatttattgagacatcatgagtcaagg-atggaatcttcatcttttcttcatcctttgcaaagctatcatagatatatgtagctacatc 37251936  T
Q  412 tacccttgggggttttgaggtattcaa 438  Q
    |||||||| ||||||||||||||||||    
T  37251935 tacccttgtgggttttgaggtattcaa 37251909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 19247991 - 19247832
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||  ||||| |||||| |||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19247991 agagagaaacacaaagcaaggtagttgggagtagattcaaaccaatatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcct 19247892  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  19247891 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 19247832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 30218555 - 30218395
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||||||  ||||||| |||||| ||| | |||||||| |||||||||||||||||||    
T  30218555 agagagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacgtcatgagtctaggcatggaatcttcatcttttcttcatcct 30218456  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    | |||||||||    | ||||||||||||||||||||||||| || |||||||||||||||    
T  30218455 tagcaaagctatcatagacatatgtagctacatctacccttgtggattttgaggtattcaa 30218395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 267 - 437
Target Start/End: Complemental strand, 33110883 - 33110708
Alignment:
Q  267 gagagatg-catttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttc 365  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||| | | ||||  || |||    
T  33110883 gagagatgacatttctagagagaaacacaaggcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgaatttaggcatgacatcttc 33110784  T
Q  366 atcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattca 437  Q
    ||||||| |||||||||||||||||||    | |||||||||| || || |||||||| |||||||||||||||||    
T  33110783 atctttttttcatcctttgcaaagctatcgtagacatatgtagttatatatacccttgtgggttttgaggtattca 33110708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 1187965 - 1188122
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| |||||||||||| ||||| ||||||  |||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  1187965 agagaaacacaaagcaaggtagttaggagtagattcaagtcaagatttgttgagacatcatgaatcttgtcatgaaatcttcatcttttcttcatccttt 1188064  T
Q  384 gcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||| ||    ||||||||||||||||||| ||| | |||||||||||||||||    
T  1188065 gcaaagctatcataggcatatgtagctacatctactctt-gtggttttgaggtattcaa 1188122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 438
Target Start/End: Original strand, 53895371 - 53895537
Alignment:
Q  276 atttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttctt 375  Q
    |||||||||||||||  |||| ||| |||||||| |||| |||||| ||||||||  |||||||||||||||||| | |||||| | ||||||| |||||    
T  53895371 atttctagagagaaattcaagacaatgtagttaaaagtagattcaacccaagatttgttgagacatcatgaatctaggcatggagtcttcatctcttctt 53895470  T
Q  376 catcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||||||||    | ||||||||||||||||||||||||  ||||||||||||||||||    
T  53895471 catcctttgcaaagctatcatagacatatgtagctacatctacccttctgggttttgaggtattcaa 53895537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 4839300 - 4839141
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  4839300 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 4839201  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  4839200 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 4839141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 20948743 - 20948903
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||||||||||| |||| |||||| ||||||||  | |||||||||||||||| | |||||||| |||||||||||||||||||    
T  20948743 agagagaaacacaaagcaaggtagttaaaagtagattcaacccaagatttgtcgagacatcatgaatctaggcatggaatcttcatcttttcttcatcct 20948842  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||  ||||||    | | ||||||||||||||||| ||||| ||||||||||||||||||    
T  20948843 ttgtcaagctatcataaatatatgtagctacatctatccttgtgggttttgaggtattcaa 20948903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 21677831 - 21677672
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||| ||||||| || || |||||| |||||||||||||||||||||||||||| | |||  ||| |||||||||||||||||||    
T  21677831 agagagaaacacaaagcaaagtagttaggaatagattcaacccaagattcattgagacatcatgaatctaggcataaaatcttcatcttttcttcatcct 21677732  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  21677731 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 21677672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 42533051 - 42532892
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||||| |||| ||||| |||||| || |||||  ||||||| ||||| ||||||||||||||| ||||||||||||||||| |    
T  42533051 agagagaaacacaaagcaaggtggttaggagtagattcaagcctagatttgttgagacgtcatggatcttgtcatggaatcttcatcttttcttcatcat 42532952  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| | |||||||||||||||||    
T  42532951 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtattcaa 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 26069723 - 26069885
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||||||||||  |||| |||||| ||||||||  ||||||||||||| |||||||||| |||| |||| || |||||||||||    
T  26069723 agagagaaacacaaagcaaggtagttagaagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcaactcttcttcatcct 26069822  T
Q  382 ttgcaaagcta----acacatatgtagctac--atctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||  ||||||||||| || |||||||||||||||    
T  26069823 ttgcaaagctatcatagacatatgtagctacatatctacccttgtggattttgaggtattcaa 26069885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 55326772 - 55326933
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagta--tattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatc 379  Q
    |||||||||||||  ||||| |||||| |||||  ||||||| |||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||    
T  55326772 agagagaaacacatagcaagatagttaggagtagatattcaacccaagattcattgagacatcatgaatctaggcatgaaatcttcatcttttcttcatc 55326871  T
Q  380 ctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    | || ||||||||    | |||||||||||||||||||||||| | |||||||||||||||||    
T  55326872 cattccaaagctatcatagacatatgtagctacatctaccctt-gtggttttgaggtattcaa 55326933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 323436 - 323577
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| ||||| |||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  323436 agagagaaacacaaagcaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 323535  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttg 419  Q
    |||||||||||    | |||||||||||||||||||| ||||    
T  323536 ttgcaaagctatcataaacatatgtagctacatctactcttg 323577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 443
Target Start/End: Complemental strand, 40995713 - 40995549
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||  ||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||| |||| |||| ||||||| |||||||||||    
T  40995713 agagagaaacacaaatcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcattgaatcttcatctcttcttcatcct 40995614  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaacaaag 443  Q
    |||||||||||    | ||||||||||||| |||||| ||| | ||||||||||||||||| ||||    
T  40995613 ttgcaaagctatcatagacatatgtagctatatctactctt-gtggttttgaggtattcaaaaaag 40995549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 22047679 - 22047838
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||| | |||||| ||||||||  ||||||||| ||| ||||||||||||||| |||| | ||||||||||||    
T  22047679 agagagaaacacaaagcaaggtagttaggagaagattcaagccaagatttgttgagacattatggatcttgtcatggaatcttcaccctttcttcatcct 22047778  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  22047779 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 22047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 438
Target Start/End: Complemental strand, 46692196 - 46692041
Alignment:
Q  286 agaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgc 385  Q
    |||||||||| |||||||||||| ||||| |||||| ||||||||  |||||||||||||||||||||||| |||| ||||| | ||| |||||||||||    
T  46692196 agaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatgaatcttgtcattgaatcttcatttcttcctcatcctttgc 46692097  T
Q  386 aaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||    | |||||||||| || |||||| ||| | |||||||||||||||||    
T  46692096 aaagctatcatagacatatgtagttatatctactctt-gtggttttgaggtattcaa 46692041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 52618512 - 52618598
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatc 368  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  52618512 agagagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatc 52618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 436
Target Start/End: Complemental strand, 44432217 - 44432060
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||| ||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||| |||||||| |||| | ||||||||||||    
T  44432217 agagagaaactcaaagcaaggtagttaggagtagattcaagccaagatttcttgagacatcatggatcttgccatggaatcttcaccctttcttcatcct 44432118  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattc 436  Q
    || ||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||    
T  44432117 ttacaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattc 44432060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 5273715 - 5273567
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||||||           |||||||||||    
T  5273715 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgga-----------ttcttcatcct 5273627  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  5273626 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 5273567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 392
Target Start/End: Complemental strand, 26373793 - 26373683
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| |||| |||  |||||| |||||| ||||| |||| |||| ||||| | ||||| |||||    
T  26373793 agagagaaacacaaagcaaggtagttaggagtagattcaagccaatatttgttgagatatcatggatcttatcattgaatcttcatttcttctttatcct 26373694  T
Q  382 ttgcaaagcta 392  Q
    |||||||||||    
T  26373693 ttgcaaagcta 26373683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 35416847 - 35416757
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatctttt 372  Q
    |||||||||||||| | ||| |||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||| ||| ||||||||||    
T  35416847 agagagaaacacaaagaaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatctttt 35416757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 438
Target Start/End: Original strand, 6639976 - 6640135
Alignment:
Q  283 gagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttc-atcct 381  Q
    ||||||||||||| ||||||  |||| ||||| ||||   |||| |||  |||||||||| ||||||||  |||| ||| ||||||||| |||| ||| |    
T  6639976 gagagaaacacaaagcaagggtgttaggagtagattcttcccaaaatttgttgagacatcttgaatcttagcatgtaatcttcatcttt-cttctatctt 6640074  T
Q  382 ttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    || |||||||  ||    |||||||||||||||||||||||| ||||||||||||||||||    
T  6640075 ttccaaagctttcatagacatatgtagctacatctacccttgtgggttttgaggtattcaa 6640135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 8894921 - 8895039
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttc 373  Q
    |||||||||||||||||||||| ||||||  ||||  |||| ||||   ||||||||  | |||| |||||||||||||||||| ||| |||||||||      
T  8894921 gcatttctagagagaaacacaatgcaagggtgttagaagtagattcttcccaagatttgtagagaaatcatgaatcttgtcatgaaatcttcatctttct 8895020  T
Q  374 ttcatcctttgcaaagcta 392  Q
    | |||| ||||||| ||||    
T  8895021 tccatcttttgcaaggcta 8895039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 282 - 435
Target Start/End: Complemental strand, 116731 - 116575
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  116731 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcctcatcttttcttcatcct 116632  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtatt 435  Q
    |||||||||||    | |||||||||||||||||||| ||| | ||||||||||||||    
T  116631 ttgcaaagctatcatagacatatgtagctacatctactctt-gtggttttgaggtatt 116575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 6730 - 6889
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  6730 agagagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcct 6829  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | ||||||||||||||||| |  ||| | |||||||||||||||||    
T  6830 ttgcaaagctatcatagacatatgtagctacatccattctt-gtggttttgaggtattcaa 6889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 8740 - 8899
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| |||| | ||||||||||||    
T  8740 agagagaaacacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatcct 8839  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  8840 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 8899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 29063 - 28904
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  29063 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 28964  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  28963 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 28904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 435
Target Start/End: Complemental strand, 16637 - 16480
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| | |||||||||||||||| |||| | ||||||||  |||||||||||||||||| | |||| ||| |||||||||||||||||||    
T  16637 agagagaaacacaaagtaaggtagttaagagtagattctacccaagatttgttgagacatcatgaatctaggcatgaaatcttcatcttttcttcatcct 16538  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtatt 435  Q
    |||| ||||||    | ||||||||| |||||| |||||||| |||||||||||||||    
T  16537 ttgccaagctatcttagacatatgtatctacatatacccttgtgggttttgaggtatt 16480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Original strand, 1562 - 1721
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||| ||||||||| |||| | ||||||||||||    
T  1562 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatcct 1661  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||||||||||||| ||| |  ||||||||||||||||    
T  1662 ttgcaaagctatcatagacatatgtagctacatctactctt-gtagttttgaggtattcaa 1721  T

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Target: scaffold0076 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 25814 - 25655
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  25814 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 25715  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | | |||||||||||||||||| ||| |  ||||||||||||||||    
T  25714 ttgcaaagctatcatagatatatgtagctacatctactctt-gtagttttgaggtattcaa 25655  T

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Target: scaffold0505 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 438
Target Start/End: Complemental strand, 1154 - 988
Alignment:
Q  275 catttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttct 374  Q
    ||||||||||||||||||||| | ||||| |||| ||||| |||| ||||||||||  |||||||||||||| ||| | |||||||||||||| | ||||    
T  1154 catttctagagagaaacacaaagtaaggt-gttaggagtagattctatccaagatttgttgagacatcatgagtctaggcatggaattttcatatcttct 1056  T
Q  375 tcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    || |||||||||||| ||    | ||||||||||||||||||||| ||| ||||||||||||||||||    
T  1055 tcgtcctttgcaaagttatcacagacatatgtagctacatctacctttgtgggttttgaggtattcaa 988  T

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Target: scaffold0298 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 12363 - 12208
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||| |||||||| ||||||||||||||||||| | ||| |||| ||||||| |||||||||||||    
T  12363 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttcatccttt 12265  T
Q  384 gcaaagcta--acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||  | | | || ||||| |||||||||||| | ||||||||||||||||    
T  12264 gcaaagctatcatagacatatagctgcatctacccttgtgtgttttgaggtattcaa 12208  T

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Target: scaffold0298; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 16133 - 15978
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||| |||||||| ||||||||||||||||||| | ||| |||| ||||||| |||||||||||||    
T  16133 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttcatccttt 16035  T
Q  384 gcaaagcta--acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||  | | | || ||||| |||||||||||| | ||||||||||||||||    
T  16034 gcaaagctatcatagacatatagctgcatctacccttgtgtgttttgaggtattcaa 15978  T

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Target: scaffold0124 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 12195 - 12350
Alignment:
Q  284 agagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatccttt 383  Q
    |||||||||||| ||||||| |||| ||||| |||||| |||||||| ||||||||||||||||||| | ||| |||| ||||||| |||||||||||||    
T  12195 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttcatccttt 12293  T
Q  384 gcaaagcta--acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||  | | | || ||||| |||||||||||| | ||||||||||||||||    
T  12294 gcaaagctatcatagacatatagctgcatctacccttgtgtgttttgaggtattcaa 12350  T

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Target: scaffold0091 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 274 - 438
Target Start/End: Original strand, 14177 - 14342
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttc 373  Q
    |||||||||||||||  ||||| ||||||| |||| ||||| ||||||  |||||||  |||||||||||||| | | |  ||||||| ||||||||||     
T  14177 gcatttctagagaga--cacaaagcaaggt-gttaggagtagattcaactcaagatttgttgagacatcatgagtttagggatggaatcttcatcttttt 14273  T
Q  374 ttcatcctttgcaaagctaaca----catatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    ||||||||||||||||||| ||    |||||||||||||||||||||||| ||||||||||||||||||    
T  14274 ttcatcctttgcaaagctatcatatacatatgtagctacatctacccttgtgggttttgaggtattcaa 14342  T

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Target: scaffold0014 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 76615 - 76456
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||  ||||||||||||| |||||||||| |||| |||| |  |||||||||||    
T  76615 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaacaattcttcatcct 76516  T
Q  382 ttgcaaagcta----acacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||    | |||||||||| ||||||||| ||| | | |||||||||||||||    
T  76515 ttgcaaagctatcatagacatatgtagatacatctactctt-gtgattttgaggtattcaa 76456  T

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Target: scaffold1832 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 411
Target Start/End: Complemental strand, 134 - 1
Alignment:
Q  282 agagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttcttcatcct 381  Q
    ||||||||| |||| |||||||||||  ||||| ||||||  |||||||  ||||||||||||| |||| | ||| |||| ||| ||| |||||||||||    
T  134 agagagaaagacaaagcaaggtagttgggagtagattcaacacaagatttgttgagacatcatggatctaggcattgaatcttcctctcttcttcatcct 35  T
Q  382 ttgcaaagcta----acacatatgtagctacatc 411  Q
    |||||||||||    | |||||||||||||||||    
T  34 ttgcaaagctatcatagacatatgtagctacatc 1  T

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Target: scaffold0160 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 438
Target Start/End: Complemental strand, 35453 - 35287
Alignment:
Q  274 gcatttctagagagaaacacaaggcaaggtagttaagagtatattcaatccaagattcattgagacatcatgaatcttgtcatggaattttcatcttttc 373  Q
    |||||||||| ||||||||||| ||||||| |||| ||||| |||| | ||||||||  ||||||||| |||| ||| |  ||| ||| ||||| |||      
T  35453 gcatttctag-gagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacattatgagtctcggtatgaaatcttcatttttct 35356  T
Q  374 ttcatcctttgcaaagct----aacacatatgtagctacatctacccttgggggttttgaggtattcaa 438  Q
    |||||||||||| |||||     | |||||||||| |||||| ||| ||| | ||||||||||||||||    
T  35355 ttcatcctttgccaagcttgcatagacatatgtaggtacatccaccattgtgagttttgaggtattcaa 35287  T

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Target: scaffold0458 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 438
Target Start/End: Complemental strand, 9564 - 9457
Alignment:
Q  335 gagacatcatgaatcttgtcatggaattttcatcttttcttcatcctttgcaaagcta----acacatatgtagctacatctacccttgggggttttgag 430  Q
    |||| ||||||||||||   ||||||| |||||||||  | |||| ||||||||| ||    | |||||||||||||||||||| |||| || |||| ||    
T  9564 gagatatcatgaatcttagtatggaatcttcatctttcttccatcttttgcaaagttatcatagacatatgtagctacatctacgcttgtggtttttaag 9465  T
Q  431 gtattcaa 438  Q
    ||||||||    
T  9464 gtattcaa 9457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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