View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379-Insertion-9 (Length: 389)
Name: NF3379-Insertion-9
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 48542026 - 48542300
Alignment:
| Q |
6 |
catgactatccttcactttcttgtgactatctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542026 |
catgactatccttcactttcttgtgactatctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagct |
48542125 |
T |
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| Q |
106 |
gtagttcttggcgtctctatcatcacccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatat |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542126 |
gtagttcttggcgtctctgtcatcacccatgaatcgaagaaacgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatat |
48542225 |
T |
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| Q |
206 |
tgaccaaaacaatggaaaacctacatgaaccaaacaataagagttagtcataacaattcggataagatatcaaaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48542226 |
tgaccaaaacaatggaaaacctacatgaaccaaacaataagagttagtcataacaatttggataagatatcaaaa |
48542300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 273 - 389
Target Start/End: Original strand, 48542488 - 48542604
Alignment:
| Q |
273 |
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagagtcataattaccgttagcatccaagtagcat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48542488 |
tatcaaaaatctgaattcatcagttgctaaataactaaaccgatcaataaatagcaaattttgttaagggtcataattaccgttagcatccaagtagcat |
48542587 |
T |
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| Q |
373 |
tttctacttccgtagga |
389 |
Q |
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||||||||||||||||| |
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| T |
48542588 |
tttctacttccgtagga |
48542604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 9837332 - 9837124
Alignment:
| Q |
20 |
actttcttgtgactatctctaatgcttcttggactcccttcaaatgttagtttacgtccatttcctcccacttctaagctgtagctgtagttcttggcgt |
119 |
Q |
| |
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||||||||||| || ||||||||||| |||||||| || || | ||||||| ||||| | ||||| || || | |||||||||||| || |||| | |
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| T |
9837332 |
actttcttgtggctgtctctaatgctccttggactgccctcgtagattagtttgcgtccgctccctcctacctcaagactgtagctgtagctcctggcat |
9837233 |
T |
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| Q |
120 |
ctctatcatcacccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatg |
219 |
Q |
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|||| ||||| |||||||| || ||||||||||||||||| || | | || |||| || || ||||||||||||||||| |||||||| |||||||| || |
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| T |
9837232 |
ctctttcatctcccatgaaacggagaaatgccatgtaaactggagccattccaagttgaaaggcttcaaaatggagacagaaatattgtccaaaacagtg |
9837133 |
T |
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| Q |
220 |
gaaaaccta |
228 |
Q |
| |
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||| ||||| |
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| T |
9837132 |
gaagaccta |
9837124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 41633007 - 41633105
Alignment:
| Q |
131 |
cccatgaatcgaagaaatgccatgtaaacaggtgacgtttcaagctggaatgcttcaaaatggagacaaaaatattgaccaaaacaatggaaaacctac |
229 |
Q |
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||||| || ||||| ||||||||||||||||| | | | ||||||| || ||||| ||||| || || |||||||| ||||||||||| || |||||| |
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| T |
41633007 |
cccataaaccgaaggaatgccatgtaaacaggggccatgccaagctgaaaagcttcgaaatgaaggcagaaatattggccaaaacaatgaaatacctac |
41633105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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