View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379R-Insertion-2 (Length: 1007)
Name: NF3379R-Insertion-2
Description: NF3379R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379R-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 693; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 9 - 827
Target Start/End: Original strand, 7108455 - 7109285
Alignment:
| Q |
9 |
ttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaatga |
108 |
Q |
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| T |
7108455 |
ttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaatga |
7108554 |
T |
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| Q |
109 |
aaatggcaaaccatataagaacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctggac----------------cccttgata |
192 |
Q |
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| T |
7108555 |
aaatagcaaagcatataaggacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctggacatatggttttctggaccccttgata |
7108654 |
T |
|
| Q |
193 |
aggtctagcttaccttcatccaccaatctagaaatacttctgctcatcacctctttggcaaaacataaaaggagaggagagatagatacagtattcctgc |
292 |
Q |
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| T |
7108655 |
aggtctagcttaccttcatccaccaatctagaaatacctctgctcatcacctctttggcaaaacataaaaggagaggagagat----acagtattcctgc |
7108750 |
T |
|
| Q |
293 |
ctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagagaatatgagtttaaaatgacctctatccaattacaaatgt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
7108751 |
ctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagacaatatgagtttaaaatgacctctatccaattccaaatgt |
7108850 |
T |
|
| Q |
393 |
tttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaagggcaagattacctcc |
492 |
Q |
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| T |
7108851 |
tttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaagggcaagattacctcc |
7108950 |
T |
|
| Q |
493 |
aaaagatctattatggagaagatcggttgcctctcaagtgaggttgatacactctttgatttgtctttgttgaataaatcctctttgatgattagaaatg |
592 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| || ||||||||| |
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| T |
7108951 |
aaaagatctattatggcgaagatcgggtgcctctcaagtgaggttgatgcactctttgatttgtctgtgttgaataaattctctttgctgcttagaaatg |
7109050 |
T |
|
| Q |
593 |
aggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagctataggcctatattgctccacacagt |
692 |
Q |
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| T |
7109051 |
aggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagctataggtctatattgctccacacagt |
7109150 |
T |
|
| Q |
693 |
caacaccttgaaacttaggtatgggaataataacattggcattgtagttagggagcatccagtcatctacaaagaaatttaaaaccgcattagttacatc |
792 |
Q |
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| T |
7109151 |
caataccttgaaacttaggtatgggaataataacattggcattgtagttagggagcatccaatcatctacaaagaaatttaaaaccgcattagttacatc |
7109250 |
T |
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| Q |
793 |
attattcacattgttccaataagtttggaagaaat |
827 |
Q |
| |
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| T |
7109251 |
agtattcacattgttccaataagtttggaagaaat |
7109285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 829 - 956
Target Start/End: Original strand, 7109577 - 7109704
Alignment:
| Q |
829 |
agccattgttgattgcaaatggctctatcgagtcatttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctctag |
928 |
Q |
| |
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|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
7109577 |
agccattgttgattgcaaatggctctgtcaagtcacttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctttgg |
7109676 |
T |
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| Q |
929 |
taggaagatggataagttgattagcctc |
956 |
Q |
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| T |
7109677 |
taggaagatggataagttgattagcctc |
7109704 |
T |
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Back To:
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