View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379R-Insertion-3 (Length: 979)
Name: NF3379R-Insertion-3
Description: NF3379R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379R-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 789; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 7 - 979
Target Start/End: Complemental strand, 42969338 - 42968371
Alignment:
| Q |
7 |
caattacaatatggaagcagtgatgatgacacaagactcagattgctacaaatggagcaatgaaccaacattgctatgttatgagtgtgattcatgcaaa |
106 |
Q |
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| T |
42969338 |
caattacaatatggaagcagtgatgatgacacaagactcagattgctacaaatggagcaatgaaccaacattgctatgttatgagtgtgattcatgcaaa |
42969239 |
T |
|
| Q |
107 |
gctggtgtacttgaagacataagaaggaattggcataagctatcagttctaactgtcacaatgcttattttgctcatagggatttattcaattggatgtt |
206 |
Q |
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| T |
42969238 |
gctggtgtacttgaagacataagaaggaattggcataagctatcagttctaactgtcacaatgcttattttgctcatagggatttattcaattggatgtt |
42969139 |
T |
|
| Q |
207 |
gtgctttcagaaatgcaagaagagctgaaacagattatccatatggtgaaaatcggatgaccaaagttagacccagatgggattaccattggtaagtcca |
306 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42969138 |
gtgcttttagaaatgcaagaagagctgaaacagattatccatatggtgaaaatcggatgaccaaagttagacccagatgggattaccattggtaagtcca |
42969039 |
T |
|
| Q |
307 |
atatatgtgatgaaaagttatatatgcatgcctataaattagatttactcaggtttttatatttgttagagttacaaatttttgcagttcacatgcttaa |
406 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42969038 |
atatatgtgatcaaaagttatatatgcatgcctataaattagatttactcaggtttttatatttgttagagttacaaatttttgtagttcacatgcttaa |
42968939 |
T |
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| Q |
407 |
ttacataattattgataagcttatggacaaagttgcaatttttttaaataccnnnnnnnnnnnnaaggattttaatacatatttaaaaaccccaagtagt |
506 |
Q |
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| T |
42968938 |
ttacataattattgataagcttatggacaaagttgcaatttttttaaataccttttttttttg---ggattttaatacatatttaaaaaccccaagtagt |
42968842 |
T |
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| Q |
507 |
ttaatgtcattgaaaaaacatcttttttgtaaaggggatcaatcaatagtgttctccatttctccgtctcatgacacgaacccagaccnnnnnnnggtgt |
606 |
Q |
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| T |
42968841 |
ttaatgtcattgaaaaaacatcctttttgtaaaggggatcaatcaatagtgttctccatttctccgtctcatgacatgaacccagacctttttttggtgt |
42968742 |
T |
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| Q |
607 |
aggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatattaattaagaaaataaacttattaggctgaatatttattggccaaagtat |
706 |
Q |
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| T |
42968741 |
aggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatattaattaagaaaataaacttattaggctgaatatttattggccaaagtat |
42968642 |
T |
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| Q |
707 |
aacnnnnnnnnnnnncaaaatggcnnnnnnntatttgaaatgatctaaattgggtattacctttacttttgccacatggaattgggatttggagggaact |
806 |
Q |
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| T |
42968641 |
aac---tttttttttcaaaatggcaaaaaaatatttgaaatgatctaaattgggtattacctttacttttgccacatggaattgggatttggagggaact |
42968545 |
T |
|
| Q |
807 |
ttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgactgttatgtgcttttttcaacagttggagatggttgcatg |
906 |
Q |
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| T |
42968544 |
ttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgattgttatgtgcttttttcaacagttggagatggttgcatg |
42968445 |
T |
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| Q |
907 |
acagaaaaagaacagctttattagcagatatgctcaatcat-catgcttggg-tgggtgggtgctccatggattg |
979 |
Q |
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| T |
42968444 |
acag-gaaagaacagctttattagcagatatgctcaaccatccatgcttgggttgggtgggtgctccatggattg |
42968371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 10678447 - 10678203
Alignment:
| Q |
59 |
tggagcaatgaaccaacattgctatgttatgagtgtgattcatgcaaagctggtgtacttgaagacataagaaggaattggcataagctatcagttctaa |
158 |
Q |
| |
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|||| ||||| ||||| || ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||| || | || ||||| | |
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| T |
10678447 |
tggaacaatgcaccaaatttactatgctatgattgtgattcttgcaaagctggtgtacttgaaaacataagaacagattggcacaaagtttctgttctta |
10678348 |
T |
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| Q |
159 |
ctgtcacaatgcttattttgctcatagggatttattcaattggatgttgtgctttcagaaatgcaagaagagctgaaacagattatccatatggtgaaaa |
258 |
Q |
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| T |
10678347 |
gtgttgttattcttgtttttcttataggaatatattctattggatgttgtgctttcagaaatgcaagaagatctgaaactgattatccacatggtgaaaa |
10678248 |
T |
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| Q |
259 |
tcggatgaccaaagttagacccagatgggattaccattggtaagt |
303 |
Q |
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| T |
10678247 |
tcgtatgaggaaagttagacctagatgggattactattggtaagt |
10678203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 647
Target Start/End: Original strand, 36815804 - 36815843
Alignment:
| Q |
608 |
ggtgaagcgtcttaccaactaagttgagcttcattgtcaa |
647 |
Q |
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| T |
36815804 |
ggtgaagcgtcttaccaactaagttgcacttcattgtcaa |
36815843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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