View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3379R-Insertion-4 (Length: 935)
Name: NF3379R-Insertion-4
Description: NF3379R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379R-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 767; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 8 - 863
Target Start/End: Original strand, 43506325 - 43507168
Alignment:
| Q |
8 |
agaaacttgacaaaccgcctccggcaacatcgtcaaccgttgcccggaaagatcaacacgctgaccatctttctcacgcatctcctgcaatatcctcata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
43506325 |
agaaacttgacaaaccgcctccggcaacatcgtcaaccgttgcccggaaagatcaacacgctgaccatctttctcacgtacctcctgcaatatcctcata |
43506424 |
T |
|
| Q |
108 |
acacgttcttcacattccttatcttcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatcct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506425 |
acacgttcttcacattccttatcttcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatcct |
43506524 |
T |
|
| Q |
208 |
taagtagcttctcataagcttcatgcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506525 |
taagtagcttctcataagcttcatgcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctct |
43506624 |
T |
|
| Q |
308 |
ttccgtaacatgaattatccacttttgttcatcaatctcaggaggccgaggaagggcaacaatctcttccaattgacgtaacaaatgtgcttcgaggtcg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506625 |
ttccgtaacatgaattatccacttttgttcatcaatctcaggaggccgaggaagggcaacaatctcttccaattgacgtaacaaatgtgcttcgaggtcg |
43506724 |
T |
|
| Q |
408 |
acgagtttagccttggcattgtcgacttcttcgtgggtgggccgatcgcctatgaggttgaggactgatcgggcttgtgagacgtcggagatggcgtggg |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506725 |
acgagtttagccttcgcattgtcgacttcttcgtgggtgggccgatcgcctatgaggttgaggactgatcgggcttgtgagacgtcggagatggcgtggg |
43506824 |
T |
|
| Q |
508 |
tcatcgcggcgaggagttttgggtctgtgagattgggcatttggccgatgattgaggaggagggtggtggttgttcgacatcggatttagatggtgagga |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506825 |
tcatcgcggcgaggagttttgggtctgtgagattgggcatttggccgatgattgaggaggagggtggtggttgttcgacatcggatttagatggtgagga |
43506924 |
T |
|
| Q |
608 |
tttggaggtgaaggatgggagacgggacatgacgtaattgaggattgggtaggttcctgggtttgggtggggatccatggtggtgttggagcatgaaatg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43506925 |
tttggaggtgaaggatgggagacgggacatgacgtaattgaggattgggtaggttcctgggtttgggtggggatccattatggtgttggagcatgaaatg |
43507024 |
T |
|
| Q |
708 |
aaagtatgaaaccaaatgaatgagattatgggaataactcactcagccaaagtttatttatgtaactacgtatttgttttgttgacgaatgtaactatga |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43507025 |
aaagtatgaaaccaaatgaatgagattatgggaataactcactcagccaaag----tttatgtaac----tatttgttttgttgacgaatgtaactatga |
43507116 |
T |
|
| Q |
808 |
gataagacaatgggatccataattggtgagttggtttctttg-ttttttgttgatga |
863 |
Q |
| |
|
||| |||||||||||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
43507117 |
gat-----aatgggatccatgattggtgagttggtatctttgtttttttgttgatga |
43507168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 894 - 935
Target Start/End: Original strand, 43508760 - 43508801
Alignment:
| Q |
894 |
tgtacgtgtgtgaaccggattggggaatagttctaatatgga |
935 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43508760 |
tgtacgtgtgtgaaccggattggggaatagttctaatatgga |
43508801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 667
Target Start/End: Original strand, 34567764 - 34567823
Alignment:
| Q |
608 |
tttggaggtgaaggatgggagacgggacatgacgtaattgaggattgggtaggttcctgg |
667 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
34567764 |
tttggtggttaaggatgggagacgggacatgacgtaggagaggatcgggaaggttcctgg |
34567823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University