View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379R-Insertion-5 (Length: 489)
Name: NF3379R-Insertion-5
Description: NF3379R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379R-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 34016441 - 34016918
Alignment:
| Q |
8 |
agaacacacctgcttcgcaacatagtccatgacctgagctgcagtgatgttgcttcctggctttcttaccacaaaagccattggaatttgccctgcatct |
107 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
34016441 |
agaacatacctgcttcgcaacatagtccatgacctgagctgcagtgatgttgcttcctggctttcttaccacaaaagccattggaatttgccgtacatct |
34016540 |
T |
|
| Q |
108 |
tcatcaggatacctggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatg-----------------ttaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34016541 |
tcatcaggatacctggtccccaaaagattagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgctaaataacaatatacattaaa |
34016640 |
T |
|
| Q |
191 |
taacaatttaacacaaaagataacaaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtaga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34016641 |
taacaatttaacacaaaagataacaaatgaattgaaaacaacttctgatttgcttttgaacacacacatactgagacgaatgattgattaaagcagtaga |
34016740 |
T |
|
| Q |
291 |
tacatacgggactac-gcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaa |
389 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34016741 |
tacatacgggactactgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaa |
34016840 |
T |
|
| Q |
390 |
tatagaaaatgatatcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
467 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016841 |
tatagaaaatgatatcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
34016918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 34024148 - 34023658
Alignment:
| Q |
8 |
agaacacacctgcttcgcaacatagtccatgacctgagctgcagtgatgttgcttcctggctttcttaccacaaaagccattggaatttgccctgcatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34024148 |
agaacacacctgcttcgcaacatagtccatgacctgagctgcagtgatgttgcttcccggctttcttaccacaaaagccattggaatttgccctgcatct |
34024049 |
T |
|
| Q |
108 |
tcatcaggatacctggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgttaaataa-------------- |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
34024048 |
tcatcaggatacctggtccccaaaagagtagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgctaaataacaatatacattaaa |
34023949 |
T |
|
| Q |
194 |
---caatttaacacaaaagataac----------aaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgatta |
280 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||| ||| |||||| |||||||||| |
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|
| T |
34023948 |
taacaatttaacacaaaagataacaaaagcattgaaatgaattgaaaataacttctgatttgctttcgaacacacacgcacaaagacgattgattgatta |
34023849 |
T |
|
| Q |
281 |
aagcagtagatacatacgggactac-gcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaag |
379 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34023848 |
aagcagtagatacatacgggactactgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaag |
34023749 |
T |
|
| Q |
380 |
gaaatgtaa--atatagaaaatgatatcttcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
467 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
34023748 |
gaaatgtaaatatatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34023658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 215 - 467
Target Start/End: Complemental strand, 34031153 - 34030894
Alignment:
| Q |
215 |
aaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggactac-gcagcatc |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34031153 |
aaatgaattgaaaacaacttctgatttgcttttgaacacacacacacaga--cgaatgattgattaaagcagtagatacatacgggactactgcagcatc |
34031056 |
T |
|
| Q |
314 |
agcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaa-------tatagaaaatgatatct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||| |
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|
| T |
34031055 |
agcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaatagcaaggaaatgtaaagataggcgatagcaaatggtatct |
34030956 |
T |
|
| Q |
407 |
tcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
467 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
34030955 |
tcaaaaatatctgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34030894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 34031458 - 34031279
Alignment:
| Q |
8 |
agaacacacctgcttcgcaacatagtccatgacctgagctgcagtgatgttgcttcctggctttcttaccacaaaagccattggaatttgccctgcatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34031458 |
agaacacacctgcttcgcaacatagtccatgacctgagctgcagtgatgttgcttcccggctttcttaccacaaaagccattggaatttgccctgcatct |
34031359 |
T |
|
| Q |
108 |
tcatcaggatacctggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgttaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||| || | |||||||||||||||| |
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|
| T |
34031358 |
tcatcaggatacctggtccccaaaagattagtagtagatttagtgaaccttct---tattaaacggtcatgtactatgttaaa |
34031279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 217
Target Start/End: Complemental strand, 34031239 - 34031208
Alignment:
| Q |
186 |
ttaaataacaatttaacacaaaagataacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34031239 |
ttaaataacaatttaacacaaaagataacaaa |
34031208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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