View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379R-Insertion-6 (Length: 413)

Name: NF3379R-Insertion-6
Description: NF3379R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379R-Insertion-6
NF3379R-Insertion-6
[»] chr1 (1 HSPs)
chr1 (9-413)||(171661-172065)


Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 172065 - 171661
Alignment:
Q  9 attagaatgaaaataagttaaaagcaaaaagctaaccaagaaaaatactggtatctctagcttctctaagcggtctaccatcagaacgaatggattcagc 108  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172065 attagaatgaaagtaagttaaaagcaaaaaactaaccaagaaaaatactggtatctctagcttctctaagcggtctaccatcagaacgaatggattcagc 171966  T
Q  109 aagatgacgttcgaagtatcgaagcggaaaaaggcgtcgaaacgcatcgacttccatttcagaggacaaatcctccgttgcagcagcatttggaacactc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  171965 aagatgacgttcgaagtatcgaagcggaaaaaggcgtcgaaacgcatcgacttccatttcagaggacaaatcctccgttgcagcagcatttggaacactc 171866  T
Q  209 attctgtaatgcaattgtgaaacagatacgaccacactcagtttcgtannnnnnngacggtggtgaacgcaaacggcgaaggaatcaacgagtggagagg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  171865 attctgtaatgcaattgtgaaacagatacgaccacactcagtttcgtatttttttgacggtggtgaacgcaaacggcgaaggaatcaacgagtggagagg 171766  T
Q  309 gtggcgcaacggtggcgagtgggaaaggaaaaacttctggcgaagaagatgagggagggagttattaggtcagtgtattgggctcaacgggtttgctggg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  171765 gtggcgcaacggtggcgagtgggaaaggaaaaacttctggcgaagaagatgagggagggagttattaggttagtgtattgggctcaacgggtttgctggg 171666  T
Q  409 tcggg 413  Q
    |||||    
T  171665 tcggg 171661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University