View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3379_high_1 (Length: 697)

Name: NF3379_high_1
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3379_high_1
NF3379_high_1
[»] chr7 (1 HSPs)
chr7 (18-686)||(7108455-7109135)


Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 686
Target Start/End: Original strand, 7108455 - 7109135
Alignment:
Q  18 ttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaatga 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7108455 ttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaatga 7108554  T
Q  118 aaatggcaaaccatataagaacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctggac----------------cccttgata 201  Q
    |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||    
T  7108555 aaatagcaaagcatataaggacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctggacatatggttttctggaccccttgata 7108654  T
Q  202 aggtctagcttaccttcatccaccaatctagaaatacttctgctcatcacctctttggcaaaacataaaaggagaggagagatagatacagtattcctgc 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  7108655 aggtctagcttaccttcatccaccaatctagaaatacctctgctcatcacctctttggcaaaacataaaaggagaggagagat----acagtattcctgc 7108750  T
Q  302 ctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagagaatatgagtttaaaatgacctctatccaattacaaatgt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  7108751 ctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagacaatatgagtttaaaatgacctctatccaattccaaatgt 7108850  T
Q  402 tttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaagggcaagattacctcc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7108851 tttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaagggcaagattacctcc 7108950  T
Q  502 aaaagatctattatggagaagatcggttgcctctcaagtgaggttgatacactctttgatttgtctttgttgaataaatcctctttgatgattagaaatg 601  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| || |||||||||    
T  7108951 aaaagatctattatggcgaagatcgggtgcctctcaagtgaggttgatgcactctttgatttgtctgtgttgaataaattctctttgctgcttagaaatg 7109050  T
Q  602 aggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagctataggcctat 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7109051 aggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagctataggtctat 7109135  T

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