View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3379_high_13 (Length: 242)
Name: NF3379_high_13
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 35 - 224
Target Start/End: Original strand, 34023959 - 34024148
Alignment:
| Q |
35 |
attgttatttaacatagtacatgcctgtctaatattaagaaggttcattaaatctacgactgctcttttggggaccaggtatcctgatgaagatgcaggg |
134 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34023959 |
attgttatttagcatagtacatgcctgtctaatattaagaaggttcattaaatctacgactactcttttggggaccaggtatcctgatgaagatgcaggg |
34024058 |
T |
|
| Q |
135 |
caaattccaatggcttttgtggtaagaaagccaggaagcaacatcactgcagctcaggtcatggactatgttgcgaagcaggtgtgttct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34024059 |
caaattccaatggcttttgtggtaagaaagccgggaagcaacatcactgcagctcaggtcatggactatgttgcgaagcaggtgtgttct |
34024148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 34016630 - 34016441
Alignment:
| Q |
35 |
attgttatttaacatagtacatgcctgtctaatattaagaaggttcattaaatctacgactgctcttttggggaccaggtatcctgatgaagatgcaggg |
134 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |
|
|
| T |
34016630 |
attgttatttagcatagtacatgcctgtctaatattaagaaggttcattaaatctacgactaatcttttggggaccaggtatcctgatgaagatgtacgg |
34016531 |
T |
|
| Q |
135 |
caaattccaatggcttttgtggtaagaaagccaggaagcaacatcactgcagctcaggtcatggactatgttgcgaagcaggtgtgttct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34016530 |
caaattccaatggcttttgtggtaagaaagccaggaagcaacatcactgcagctcaggtcatggactatgttgcgaagcaggtatgttct |
34016441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 34031279 - 34031458
Alignment:
| Q |
42 |
tttaacatagtacatgcctgtctaatattaagaaggttcattaaatctacgactgctcttttggggaccaggtatcctgatgaagatgcagggcaaattc |
141 |
Q |
| |
|
|||||||||||||||| | || ||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34031279 |
tttaacatagtacatgaccgtttaata---agaaggttcactaaatctactactaatcttttggggaccaggtatcctgatgaagatgcagggcaaattc |
34031375 |
T |
|
| Q |
142 |
caatggcttttgtggtaagaaagccaggaagcaacatcactgcagctcaggtcatggactatgttgcgaagcaggtgtgttct |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34031376 |
caatggcttttgtggtaagaaagccgggaagcaacatcactgcagctcaggtcatggactatgttgcgaagcaggtgtgttct |
34031458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34016681 - 34016636
Alignment:
| Q |
1 |
ttgttttcaattcatttgttatcttttgtgttaaattgttatttaa |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34016681 |
ttgttttcaattcatttgttatcttttgtgttaaattgttatttaa |
34016636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 34023912 - 34023953
Alignment:
| Q |
5 |
tttcaattcatttgttatcttttgtgttaaattgttatttaa |
46 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
34023912 |
tttcaatgcttttgttatcttttgtgttaaattgttatttaa |
34023953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 34031208 - 34031239
Alignment:
| Q |
15 |
tttgttatcttttgtgttaaattgttatttaa |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34031208 |
tttgttatcttttgtgttaaattgttatttaa |
34031239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University