View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379_high_5 (Length: 332)
Name: NF3379_high_5
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379_high_5 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 4 - 314
Target Start/End: Complemental strand, 70880 - 70570
Alignment:
| Q |
4 |
acaaaaacaaaaacaaccaacttagatttcttctcacatcacaacctaacaaatccaacaaccacatccacaacaaaatcctctcaatacccaccatgca |
103 |
Q |
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| T |
70880 |
acaaaaacaaaaacaaccaacttagatttcttctcacatcacaacctaacaaatccaacaaccacatccacaacaaaatcctctcaatacccaccatgca |
70781 |
T |
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| Q |
104 |
ccccctctttaactgactacaccccctgtgaagaccacacgcgctccttaaaatacacgcgcgacaaaatgatatatcgtgaacgacactgtcctaagaa |
203 |
Q |
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| T |
70780 |
ccccctctttaactgactacaccccctgtgaagaccacacgcgctccttaaaatacacgcgcgacaaaatgatatatcgtgaacgacactgtcctaagaa |
70681 |
T |
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| Q |
204 |
acatgaaatcttaaagtgtcgtgttccagcaccaaatggttacaaaaatcctttcccatggcccacaagtagagacatggcttggtatgcaaatgtacct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70680 |
acatgaaatcttaaagtgtcgtgttccagcaccaaatggttacaaaaatcctttcccatggcccacaagtagagacatggcttggtatgcaaatgtacct |
70581 |
T |
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| Q |
304 |
taccgtcattt |
314 |
Q |
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||||||||||| |
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| T |
70580 |
taccgtcattt |
70570 |
T |
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