View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379_low_11 (Length: 275)
Name: NF3379_low_11
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34016682 - 34016918
Alignment:
| Q |
1 |
cttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggactaccgcagcatcagcaatttcaggattgg |
100 |
Q |
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| T |
34016682 |
cttctgatttgcttttgaacacacacatactgagacgaatgattgattaaagcagtagatacatacgggactactgcagcatcagcaatttcaggattgg |
34016781 |
T |
|
| Q |
101 |
tatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatatagaaaatgatatcttcaaaaatatttgtcccttcacaa |
200 |
Q |
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| T |
34016782 |
tatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatatagaaaatgatatcttcaaaaatatttgtcccttcacaa |
34016881 |
T |
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| Q |
201 |
tgcatcgcctgataagctttgtattagatcaattcct |
237 |
Q |
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| T |
34016882 |
tgcatcgcctgataagctttgtattagatcaattcct |
34016918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34023897 - 34023658
Alignment:
| Q |
1 |
cttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggactaccgcagcatcagcaatttcaggattgg |
100 |
Q |
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|||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34023897 |
cttctgatttgctttcgaacacacacgcacaaagacgattgattgattaaagcagtagatacatacgggactactgcagcatcagcaatttcaggattgg |
34023798 |
T |
|
| Q |
101 |
tatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaa--atatagaaaatgatatcttcaaaaatatttgtcc-cttca |
197 |
Q |
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| T |
34023797 |
tatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatatatagcaaatgatatcttcaaaaatatatgtccacttca |
34023698 |
T |
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| Q |
198 |
caatgcatcgcctgataagctttgtattagatcaattcct |
237 |
Q |
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| T |
34023697 |
caatgcatcacctgataagctttgtatttgatcaattcct |
34023658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34031136 - 34030894
Alignment:
| Q |
1 |
cttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggactaccgcagcatcagcaatttcaggattgg |
100 |
Q |
| |
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|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34031136 |
cttctgatttgcttttgaacacacacacacaga--cgaatgattgattaaagcagtagatacatacgggactactgcagcatcagcaatttcaggattgg |
34031039 |
T |
|
| Q |
101 |
tatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaa-------tatagaaaatgatatcttcaaaaatatttgtcc- |
192 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||| ||||| |
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| T |
34031038 |
tatgaagtatgtgctctaattcagctgggggaacctgaaaaatagcaaggaaatgtaaagataggcgatagcaaatggtatcttcaaaaatatctgtcca |
34030939 |
T |
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| Q |
193 |
cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
237 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34030938 |
cttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34030894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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