View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3379_low_3 (Length: 447)
Name: NF3379_low_3
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379_low_3 |
 | |
|
| [»] scaffold0147 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 24 - 433
Target Start/End: Complemental strand, 43879355 - 43878949
Alignment:
| Q |
24 |
tggtgaaagtaaaacagatttcattcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaatcttccctttgactttga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43879355 |
tggtgaaagtaaaacagatttcattcatatacaccacaagaattaagatttatattat---ctacaacctgattgatccaaatcttccctttgactttga |
43879259 |
T |
|
| Q |
124 |
tcgtttgatgctgacagaggattgtgaaacagacaattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43879258 |
tcgtttgatgctgacagaggattgtgaaacagacaattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacga |
43879159 |
T |
|
| Q |
224 |
gaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43879158 |
gaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacac |
43879059 |
T |
|
| Q |
324 |
atgaatcattcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttcacaaaactcacatgnnnnnnnncaatacttgc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43879058 |
atgaatcattcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttcacaaaactcacatgttttttttcaatacttgc |
43878959 |
T |
|
| Q |
424 |
agcatcttcc |
433 |
Q |
| |
|
|||||||||| |
|
|
| T |
43878958 |
agcatcttcc |
43878949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 304
Target Start/End: Original strand, 7574 - 7701
Alignment:
| Q |
177 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
276 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| ||||| || || |||||||| ||||||||||||||||| || |||||||| ||||||| ||||||||| |
|
|
| T |
7574 |
tgaaaaacctgttcacaatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctga |
7673 |
T |
|
| Q |
277 |
atcattcatctccaattccttcatcttc |
304 |
Q |
| |
|
||| |||| || ||||||||||||||| |
|
|
| T |
7674 |
atccatcatatctaattccttcatcttc |
7701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 304
Target Start/End: Original strand, 13158 - 13285
Alignment:
| Q |
177 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
276 |
Q |
| |
|
|||||||| |||| |||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||| |
|
|
| T |
13158 |
tgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctga |
13257 |
T |
|
| Q |
277 |
atcattcatctccaattccttcatcttc |
304 |
Q |
| |
|
|| |||| |||| || |||||||||| |
|
|
| T |
13258 |
ttccatcatatccattttcttcatcttc |
13285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 1894073 - 1894015
Alignment:
| Q |
47 |
ttcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| |
|
|
| T |
1894073 |
ttcatatacaccacaagaattaagatttatgcta-tatctacaacctggttgatctaaat |
1894015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University