View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3379_low_7 (Length: 365)
Name: NF3379_low_7
Description: NF3379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3379_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3619240 - 3619591
Alignment:
| Q |
1 |
atattacatggtctgatgcttgatatcatatgttatggaaatactatttgtttcatgtaatatacttattgttttggtaagtttatttgtgtatcatctt |
100 |
Q |
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| T |
3619240 |
atattacatggtctgatgcttgatatcatatgttatggaaatactatttgtttcatgtaatatacttattgttttggtaagtttatttgtatatcatctt |
3619339 |
T |
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| Q |
101 |
ctacgtatcatatatatttatcagtaatgcatctaaaaacttaaatcacaagcaagcagacacggtgtttatatcaatctctgatacaaatattacataa |
200 |
Q |
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| T |
3619340 |
ttatgtatcatatatatttatcagtaatgcatctaaaaacttaaatcacaagcaagcagacacggtgtttatatcaatctctgatacaaatattgcataa |
3619439 |
T |
|
| Q |
201 |
acccttatacataaagaaaaacaagc--atacctccacactgtaattacctacaacatcaatgtatagaacctag----attaagcaacttgcataccag |
294 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
3619440 |
accattatacataaagaaaaacaagcatatacctccacactgtaattacctacaacatcaatgtatagaatctagattaattaagcaacttgcataccag |
3619539 |
T |
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| Q |
295 |
cgtatactaaaaactgtcgattacgacatttacatgtgattcttggcaacaa |
346 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3619540 |
cgtatactaaaaactgtcgattgcgacatttacatgtgattcttggcaacaa |
3619591 |
T |
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