View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3380_low_1 (Length: 409)
Name: NF3380_low_1
Description: NF3380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3380_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 8474595 - 8474195
Alignment:
| Q |
1 |
ctccactcttgtgcattttgaaccttttaacgtcaaaattaccagtcgagagagtcctttccaaaccgggagtgatacaatctcgattaataagttgcta |
100 |
Q |
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| T |
8474595 |
ctccactcttgtgcattttgaaccttttaacgtcaaaattaccagtcgagagagtcctttccaaaccgggagtgatacaatctcgattaataagttgcta |
8474496 |
T |
|
| Q |
101 |
taaacacatccaaagaaactatgtaaattgaaatccagagatgctaagatcaggttggactagcaagccaacgacaccaaacatgaacatataagatgat |
200 |
Q |
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| T |
8474495 |
taaacacatccaaagaaactatgtaaattgaaatccagagatgctaagatcaggttggactaacaagccaacgacaccaaacatgaacatataagatgat |
8474396 |
T |
|
| Q |
201 |
gaaaccagtgaattatgtctttcatgtgaacaaacaagccgcattgaaaacattcacattgatgaatatcagaataacatgagtaaataaatttctagtg |
300 |
Q |
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| T |
8474395 |
gaaaccagtgaattatgtctttcatgtgtacaaacaagccgcattgaaaacattcacattgatgaatatcagaataacatgagtaaataaatttctagtg |
8474296 |
T |
|
| Q |
301 |
ccatctaaactttggagcttcccaagaaaaaacgactatcaagatcagagacttgcagctaaattgcatttcatatgttttcgtcaacttcatctgtgct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8474295 |
ccatctaaactttggagcttcccaagaaaaaacgactatcaagatcagatacttgcagctaaattgcatttcatatgttttcgtcaacttcatctgtgct |
8474196 |
T |
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| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
8474195 |
g |
8474195 |
T |
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