View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3381_high_3 (Length: 366)
Name: NF3381_high_3
Description: NF3381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3381_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 9939784 - 9939496
Alignment:
| Q |
18 |
ggttgtgataaattaggacaatttttacaa-gtgtatcatatcgttctaagttataaagtaagttaatgtctttccatgaatttttattttctactaggt |
116 |
Q |
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| T |
9939784 |
ggttatgacaaattatgacaactttaacaaagtatatcaaattgttctaagttataaagtaagttaatgtctctgtatgaattgttattttctactaggc |
9939685 |
T |
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| Q |
117 |
aattaactaaacttataattaaaaactgtaaatttggagagtttgcattattgtttgcttacaacgtaattaaaagggtaggaacaaagatttgacggtg |
216 |
Q |
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| T |
9939684 |
aattaactaagcttataattaaaaaccgtaaattggaagattttgcaagattgtttgattacaacg----taaaagggtaggaacaaagatttgacggtg |
9939589 |
T |
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| Q |
217 |
ataggaa-ttttcgaatctcatatatgtctttgttggattatcgtatgttcctagatcaaatactatctaaggtttatattcaagatgtctaa |
308 |
Q |
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| T |
9939588 |
ataggaatttttcgaatctcatctatgtctttgttgtattatcatatgttcctagatcaaacactatctaaggtttatattcaagatgtctaa |
9939496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 9939018 - 9938971
Alignment:
| Q |
305 |
ctaacaaagtaaggcttactccgtgttcggttataggcccatatgatg |
352 |
Q |
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| T |
9939018 |
ctaataaagtaaggcttactccgtgttcggttataggcccatatgatg |
9938971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 24480887 - 24480797
Alignment:
| Q |
226 |
ttcgaatctcatatatgtctttgttggattatcgtatgttcctagatcaaat-actatctaaggtttatattcaagatgtctaacaaagtaa |
316 |
Q |
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| T |
24480887 |
ttcgaatctctt-tatgtctttgttggattagcacatgatcctagatcaaattactatcaaagatttatatccatgatgtctaacaaagtaa |
24480797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 9497470 - 9497363
Alignment:
| Q |
239 |
tatgtctttgttggattatcgtatgttcctagatcaaatactatctaaggtttatattcaagatgtctaacaaagtaaggcttactccgtgttcggttat |
338 |
Q |
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| T |
9497470 |
tatgtctttgttggattaacacatgttcctagatcaaatactacctaagatttatattcacgacgtctaacaaagtaaggcctaccccgtcttcggtttt |
9497371 |
T |
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| Q |
339 |
aggcccat |
346 |
Q |
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| T |
9497370 |
agtcccat |
9497363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 20039818 - 20039771
Alignment:
| Q |
104 |
ttttctactaggtaattaactaaacttataattaaaaactgtaaattt |
151 |
Q |
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| T |
20039818 |
ttttctattaggcaatttactaaacttataattaaaaactataaattt |
20039771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 11188858 - 11188928
Alignment:
| Q |
104 |
ttttctactaggtaattaactaaacttataattaaaaactgtaaatt-tggagagtttgcattattgtttg |
173 |
Q |
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| T |
11188858 |
ttttttactaagtaatttactaaacttataattaaaaattgcaaattgtggggagtttgcaagattgtttg |
11188928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 6121123 - 6121185
Alignment:
| Q |
255 |
tatcgtatgttcctagatcaaatactatctaaggtttatattcaagatgtctaacaaagtaag |
317 |
Q |
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| T |
6121123 |
tatcttatgttcctagatcaaatactatttaatgtttatactcacgagacctaacaaagtaag |
6121185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 43626498 - 43626414
Alignment:
| Q |
239 |
tatgtctttgttggattatcgtatgttcctagatcaaatactatctaaggtttatattcaagatgtctaacaaagtaaggcttact |
324 |
Q |
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| T |
43626498 |
tatgtctttgttggattagtgcatgttcctaga-caaatattatttaagatttatacttacgacgtctaataaagtaaggcctact |
43626414 |
T |
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