View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3381_high_4 (Length: 220)
Name: NF3381_high_4
Description: NF3381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3381_high_4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0179 (2 HSPs) |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40067889 - 40067670
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40067889 |
ccaagttcctataaacatagttcaaaattagataaatcaaaatacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
40067790 |
T |
|
| Q |
101 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40067789 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
40067690 |
T |
|
| Q |
201 |
tttaagcaccaagaaaataa |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
40067689 |
tttaagcaccaagaaaataa |
40067670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 22773254 - 22773473
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22773254 |
ccaagttcctataaacatagttcaaaattagataaatcaaaatacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
22773353 |
T |
|
| Q |
101 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22773354 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
22773453 |
T |
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| Q |
201 |
tttaagcaccaagaaaataa |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
22773454 |
tttaagcaccaagaaaataa |
22773473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26081433 - 26081652
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26081433 |
ccaagttcctataaacatagttcaaaattagataaatcaaaatacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
26081532 |
T |
|
| Q |
101 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26081533 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
26081632 |
T |
|
| Q |
201 |
tttaagcaccaagaaaataa |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
26081633 |
tttaagcaccaagaaaataa |
26081652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 21622 - 21837
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||| |||||| |||||||||||||||||||||| ||||| |
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| T |
21622 |
ccaagttcctataaacatagttcaaaattagataaatcaaaatacatttaattaaaa-tcttagatcatcgcaatgaagattaattacaatcttaaatct |
21720 |
T |
|
| Q |
101 |
tcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21721 |
tcacaatgaagagtaattataatctcttaaatttcctttgacacttcataaaatgaacaacaattagctcatcgctcatacatcaactctagcacatttc |
21820 |
T |
|
| Q |
201 |
tttaagcaccaagaaaa |
217 |
Q |
| |
|
|||| ||||||||||| |
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| T |
21821 |
cttaaacaccaagaaaa |
21837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19655 - 19603
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaatt |
53 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
19655 |
ccaagttcctataaacatagttcaaaattagataaatcaaaatacatttaatt |
19603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 37704445 - 37704339
Alignment:
| Q |
95 |
caatcttcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |
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| T |
37704445 |
caatcttcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattatctcatcactcatacatcaactcttgca |
37704346 |
T |
|
| Q |
195 |
catttct |
201 |
Q |
| |
|
||||||| |
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| T |
37704345 |
catttct |
37704339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37704626 - 37704569
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaattcaaac |
58 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
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|
| T |
37704626 |
ccaagttcctataaacatagttccaaattagataaatcaaaatacatttaattcaaac |
37704569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2796 - 2740
Alignment:
| Q |
1 |
ccaagttcctataaacatagttcaaaattagataaatcgaattacatttaattcaaac |
58 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||| || |||||||||||||||| |
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|
| T |
2796 |
ccaagttcctataaacatagtttaaa-ttagataaatcaaaatacatttaattcaaac |
2740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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