View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3381_low_1 (Length: 428)
Name: NF3381_low_1
Description: NF3381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3381_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 46376697 - 46376327
Alignment:
| Q |
16 |
actaagccagcatattttgtcacttcaggccaatcttgggaggctacaacctatatagattggaaagcaagtctcagctgcaaaaaatcctcaatacaca |
115 |
Q |
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| T |
46376697 |
actaagccagcatattttgtcacttcaggccaatcttgggaggctacaacctatatagattggaaagcaagtctcagctgcaaaaaatcctcaatacaca |
46376598 |
T |
|
| Q |
116 |
ttacaatgctaataaaaatcaagataatagattagataaatacagctgctattgaggggctagagtcttctccattttcagggtgtgtaacatctgctcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46376597 |
ttacaatgctaataaaaatcaagataatagattagataaatacagctgctattgaggggctagagtcttctccattttcagggtgtgtaacatctgctcc |
46376498 |
T |
|
| Q |
216 |
aaaaattatggttggtatgtcgctaactaatggtatcctgtagcttgcagcgtcaagaagaacagtatttctccctcccatctgcaccaagaagagggta |
315 |
Q |
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| T |
46376497 |
aaaaattatggttggtatgtcgctaactaatggtattctgtagcttgcagcatcaagaagaacagtatttctccctcccatctgcaccaagaagagggta |
46376398 |
T |
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| Q |
316 |
aattaacactttctaattatcggatataactctgagaattgagagaaattttgacataaatattggaagag |
386 |
Q |
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| T |
46376397 |
aattaacactttctaattatcggatataactctgagaattgagagaaattttgacataaatattggaagag |
46376327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 15410916 - 15410761
Alignment:
| Q |
155 |
atacagctgctattgaggggctagagtcttctccattttcagggtgtgtaacatctgctccaaaaattatggttggtatgtcgctaactaatggtatcct |
254 |
Q |
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| T |
15410916 |
atacagctgctattgaggggctggaatcttccccattttcagggtgagtaacatctgctccaaatattattgtcggtatgtcactaaccaatggtattct |
15410817 |
T |
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| Q |
255 |
gtagcttgcagcgtcaagaagaacagtatttctccctcccatctgcaccaagaaga |
310 |
Q |
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| T |
15410816 |
gcagcttacggcatcaacaagaacggtgtttctaccccccatctgcatcaataaga |
15410761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 15411036 - 15410997
Alignment:
| Q |
31 |
tttgtcacttcaggccaatcttgggaggctacaacctata |
70 |
Q |
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| T |
15411036 |
tttgtaacttcaggccaatcttgggatgctacaacctata |
15410997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 46834943 - 46835286
Alignment:
| Q |
16 |
actaagccagcatattttgtcacttcaggccaatcttgggaggctacaacctatatagattggaaagcaagtctcagctgcaaaaaatcctcaatacaca |
115 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||| |
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| T |
46834943 |
actaaaccagcatattttgtcacttcaggccagtcttgggaagctacaacctatatagattggaaagcaagtatcagttacaaaaaatcctcaataaaca |
46835042 |
T |
|
| Q |
116 |
ttacaatgctaataaaaatcaagataatagattagataaatacagctgctattgaggggctagagtcttctccattttcagggtgtgtaacatctgctcc |
215 |
Q |
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| T |
46835043 |
ttacaatgctaataaaaatcaagatgatagattagataaatacagctgccattgaggggctagagtcttctccattttcagggtgtgtaacatctgcccc |
46835142 |
T |
|
| Q |
216 |
aaaaattatggttggtatgtcgctaactaatggtatcctgtagcttgcagcgtcaagaagaacagtatttctccctcccatctgcaccaagaagagggta |
315 |
Q |
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|||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
46835143 |
aaaaattatggtcggt--gtcgctaactaatggtattctgtagcttgcagcgtcaagaagaatagtgtttctccctcccatctgcaccaagaagagggta |
46835240 |
T |
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| Q |
316 |
aattaacactttctaattatcggatataactctgagaattgagagaaattt |
366 |
Q |
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| |||||| ||||| | |||| || | ||||||||||||||||||| |
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| T |
46835241 |
a-----cactttttaattcttggatgtagttatgagaattgagagaaattt |
46835286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 43019193 - 43019235
Alignment:
| Q |
25 |
gcatattttgtcacttcaggccaatcttgggaggctacaacct |
67 |
Q |
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| T |
43019193 |
gcatactttgtcacttctggccagtcttgggaggctacaacct |
43019235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 46530748 - 46530706
Alignment:
| Q |
25 |
gcatattttgtcacttcaggccaatcttgggaggctacaacct |
67 |
Q |
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||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
46530748 |
gcatactttgtcacttctggccagtcttgggaggctacaacct |
46530706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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