View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3381_low_4 (Length: 244)

Name: NF3381_low_4

Description: NF3381

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3381_low_4

[»] chr5 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 217; E-Value: 1e-119

Query Start/End: Original strand, 4 - 220

Target Start/End: Original strand, 21546756 - 21546972

Alignment:

Q	4	aaaacaacttagcaattttgttagcttagcaactattgattttactatttggtgtacattaagaaatcataaccttggtggttacaaacctgcaagtagg	103	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21546756	aaaacaacttagcaattttgttagcttagcaactattgattttactatttggtgtacattaagaaatcataaccttggtggttacaaacctgcaagtagg	21546855	T

Q	104	atgacacacagcagaaggaaaatattcatgtttgtgtctataaaaacaaaaattatgggagttataagatttttgaaagtgatattataagttagggtga	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21546856	atgacacacagcagaaggaaaatattcatgtttgtgtctataaaaacaaaaattatgggagttataagatttttgaaagtgatattataagttagggtga	21546955	T

Q	204	accatcgtttatataag	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21546956	accatcgtttatataag	21546972	T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 81 - 136

Target Start/End: Original strand, 8026230 - 8026285

Alignment:

Q	81	gtggttacaaacctgcaagtaggatgacacacagcagaaggaaaatattcatgttt	136	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	8026230	gtggttactaacctgaaagtaggatgacaaatagcagaaggataatattcatgttt	8026285	T

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