View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3382_high_11 (Length: 357)

Name: NF3382_high_11
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3382_high_11
NF3382_high_11
[»] chr5 (1 HSPs)
chr5 (10-357)||(21546308-21546656)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 21546308 - 21546656
Alignment:
Q  10 aacctgtggtagcatactaatattatgcttgcattcataaaatcataagtaaaactaaaatacaacactgtaatataatgctcacacgaaatcgaaccct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21546308 aacctgtggtagcatactaatattatgcttgcattcataaaatcataagtaaaactaaaatacaacactgtaatataatgctcacacgaaatcgaaccct 21546407  T
Q  110 cgcagaacacaaacatactttacgtaacacttgaaaatgatcacggtttgttgttagtctctacatcttcattta--acacgaatatgtagtcattgtta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  21546408 cgcagaacacaaacatactttacgtaacacttgaaaatgatcacggtttgttgttagtctctacatcttcatttaacacacgaatatgtagtcattgtta 21546507  T
Q  208 ttttttatatatgcatatgataannnnnnnnngtaaatgtactaaactcgaatcagatgtaattgtagagctaaattgtaattcaaaaacatatcagaat 307  Q
    |||| ||||||||||| |||| |         |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21546508 ttttatatatatgcatgtgat-atatttatatgtaaatgtactaaactcgaatcagatgtaaatgtagagctaaattgtaattcaaaaacatatcagaat 21546606  T
Q  308 cgctaattaaagataaatcctaacaatattctcgacagaattgttaattt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21546607 cgctaattaaagataaatcctaacaatattctcgacagaattgttaattt 21546656  T

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