View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_high_4 (Length: 494)
Name: NF3382_high_4
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 46 - 479
Target Start/End: Original strand, 22342463 - 22342910
Alignment:
| Q |
46 |
aaaaaaggaaagagacaaactccattccattgtttatgtggtggcccgtacacaaccgattatgtcatgccaatatagtaaatgcaattttgttttgctt |
145 |
Q |
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| T |
22342463 |
aaaaaaggaaagagacaaactccattccattgtttatgtggtggcccgtacacaaccgattatgtcatgctaatatagttaatgcaattttgttttgctt |
22342562 |
T |
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| Q |
146 |
taatactaaaacaggctgcacacaaatattgtactcacaagcacatcacatgcatcgtgcatgaaaaatctcagtgtttgtcgataccaaactacgcaat |
245 |
Q |
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| T |
22342563 |
taatactaaaacaggctgcacacaaatattgtactcacaagcacatcacatgcatcgtgcatgaaaaatctcagtgtttgtcgataccaaactatgcaat |
22342662 |
T |
|
| Q |
246 |
gcacctttcaatgctagtttgggctatgcaaatctcgtgtgaaataaatatcaacttcccaattatccaaatttcttccatgatcagattctatgagcag |
345 |
Q |
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| T |
22342663 |
gcacctttcaatgctagtttgggctatgcaaatctcgtgtgaaataaatatcaagttcccaattatccaaatttcttccatgatcagattatatgagtag |
22342762 |
T |
|
| Q |
346 |
tagtttga-ttttgattcattgaaaatgtaacattcttagctcttggactctttagacacatatcatatacatgttctcatggatatacat--------- |
435 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22342763 |
tagtttgatttttgatttattgaaaatgtaacattcttagctcttggactctttagacacatatcatatacatgttctcatgaatatacatgaccccagt |
22342862 |
T |
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| Q |
436 |
----gaccctattattagttgcactaacaagtactttgcagtggaaga |
479 |
Q |
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| T |
22342863 |
tcaggaccctattattagttgcactaacaagtactttgcagtggaaga |
22342910 |
T |
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