View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_high_6 (Length: 444)
Name: NF3382_high_6
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 44003209 - 44003634
Alignment:
| Q |
16 |
atatcaaccttatgagacaagaataagagacaaaccaaagttgaaacctagtagaatagtattggtgtacaagagttggttaagattcagctatgcatct |
115 |
Q |
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| T |
44003209 |
atatcaaccttatgagacaagaataagagacaaaccaaagttgaaacctagtagaatagtattggtgtacaagagttggttaagattcagctatgcatct |
44003308 |
T |
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| Q |
116 |
aacagtttctgttattgtttacctctcgatagagtagttaaaaacactagataacaaattatgtacagatttaagaaggttaacaaatgttaacgaaaca |
215 |
Q |
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| T |
44003309 |
aacagtttctgttattgtttacctctcgatagagtagttaaaaacactagataacaaattatgtacagatttaagaaggttaacaaatgttaacgaaaca |
44003408 |
T |
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| Q |
216 |
aatgtaaaaatttcaaggttaatatcatcatgacatggaattcaagaaaataatgaatgtggaaacaatcaaacatcccctacttgtaaaaattggacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
44003409 |
aatgtaaaaatttcaaggttaatatcatcatgacatggaattcaagaaaataataaatgtgggaacaatcaaacatcccctacttgtcaaaattggacat |
44003508 |
T |
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| Q |
316 |
aagtaaacaaaacatgtatagtatcaaaattgattttaattttagaaagtccaagaccagatgaggcaatctccataaatacttgaaaccgctttagaca |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003509 |
aaataaacaaaacatgtatagtatcaaaattgattttaattttagaaagtccaagaccagatgaggcaatctccataaatacttgaaaccgctttagaca |
44003608 |
T |
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| Q |
416 |
tactaaatgttactattttaagcaggttt |
444 |
Q |
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| T |
44003609 |
tac---atgttactattttaagcaggttt |
44003634 |
T |
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