View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3382_low_1 (Length: 914)

Name: NF3382_low_1
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3382_low_1
NF3382_low_1
[»] chr4 (7 HSPs)
chr4 (372-703)||(5531008-5531340)
chr4 (18-204)||(5530641-5530827)
chr4 (18-203)||(5922976-5923161)
chr4 (21-203)||(5936385-5936567)
chr4 (776-904)||(5531413-5531541)
chr4 (42-202)||(38178776-38178936)
chr4 (603-640)||(5531374-5531411)
[»] chr2 (1 HSPs)
chr2 (42-201)||(11734138-11734297)
[»] chr8 (2 HSPs)
chr8 (57-201)||(40919556-40919700)
chr8 (117-201)||(45319421-45319505)
[»] chr3 (1 HSPs)
chr3 (18-201)||(53148130-53148313)
[»] chr7 (1 HSPs)
chr7 (105-190)||(34839868-34839953)
[»] chr1 (1 HSPs)
chr1 (102-190)||(45454432-45454520)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 372 - 703
Target Start/End: Original strand, 5531008 - 5531340
Alignment:
Q  372 ggtttcaatgatttataagtattgatggatttgattttgttagtgattgtttgaagtgttgaagtgtatttttagagttatgtgggttatttttgtaatg 471  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5531008 ggtttcaatgttttagaagtattgatggatttgattttgttagtgattgtttgaagtgttgaagtgtatttttagagttatgtgggttatttttgaaatg 5531107  T
Q  472 ggtatgtggtcatttagggatttgctgnnnnnnnnggatttatggatttgttagcggttgcttgaagtgatgaagttgtggttgaagtgttggtgtgttt 571  Q
    | |||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  5531108 gttatgtggtcatttagggatttgctgttttttttggatttatggatttgttagcggttgtttgaagtgatcaagttgtggttgaagtgttggtgtgttt 5531207  T
Q  572 ttcatagagatttgttggtgatttagtgattggttgtgttgatgtgttttctaacttgttttgaaattta-ggttgtgttcgttttgaagtgttgatcga 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5531208 ttcatagagatttgttggtgatttagtgattggttgtgttgatgtgttttctaacttgttttgaaatttagggttgtgttcgttttgaagtgttgatcga 5531307  T
Q  671 ttgtcaagtgtgtgtttgatgaaatgaagttgt 703  Q
    |||||||||||||||||| ||||||||||||||    
T  5531308 ttgtcaagtgtgtgtttgttgaaatgaagttgt 5531340  T

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Target: chr4; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 5530641 - 5530827
Alignment:
Q  18 actatggacagtatccggtctggaccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggc 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5530641 actatggatagtatccggtctggaccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggc 5530740  T
Q  118 attatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggtatgg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5530741 attatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggtatgg 5530827  T

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Target: chr4; HSP #3
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 5923161 - 5922976
Alignment:
Q  18 actatggacagtatccggtctggaccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggc 117  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  5923161 actatggacagtgtccggtctggaccgtacggtcagatctttagaccggataactttgtgtttggtcagagtggtgctggtaataactgggctaaagggc 5923062  T
Q  118 attatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggtatg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5923061 attatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggtatg 5922976  T

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Target: chr4; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 5936567 - 5936385
Alignment:
Q  21 atggacagtatccggtctggaccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcatt 120  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||    
T  5936567 atggacagtgtccggtctggaccgtacggtcagatctttagaccggataactttgtctttggacagagtggtgctggtaataactgggctaaaggacatt 5936468  T
Q  121 atactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggtatg 203  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  5936467 acactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgaaaacagtgattgcttgcagggtatg 5936385  T

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Target: chr4; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 776 - 904
Target Start/End: Original strand, 5531413 - 5531541
Alignment:
Q  776 gggatttgttgattcaatgtggtgatggattaattagtgtttgtttgaactaatgaagttgtagttgaagtgttgatgtgtttttatacagttgtggggg 875  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5531413 gggatttgttgattcaatgtggtgatggattaattagtgtttgtttgaactaatgaagttgtagttgaagtgttgatgtgtttttatacagttgtgggtg 5531512  T
Q  876 attcttgtatgggttcaattagccctttg 904  Q
    |||||||||||||||||||||||||||||    
T  5531513 attcttgtatgggttcaattagccctttg 5531541  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 38178936 - 38178776
Alignment:
Q  42 ccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcattatactgaaggcgctgagctta 141  Q
    |||| ||| ||||||||| |||||||||| || || || ||||||   ||||| || ||||| ||||| ||||| ||||| || |||||||||||| | |    
T  38178936 ccgtttggccagatctttcgaccggataacttcgttttcggtcagtccggtgccggaaataattgggcgaaaggtcattacaccgaaggcgctgagttga 38178837  T
Q  142 ttgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggtat 202  Q
    ||||||| ||| | |||||||| |||||||| ||||||||||| ||||||||||| |||||    
T  38178836 ttgattccgttttggatgttgtgaggaaagaggctgagaattgcgattgcttgcaaggtat 38178776  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 640
Target Start/End: Original strand, 5531374 - 5531411
Alignment:
Q  603 ggttgtgttgatgtgttttctaacttgttttgaaattt 640  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  5531374 ggttgtgttgatgtgttttctgacttgttttgaaattt 5531411  T

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Target: chr2 (Bit Score: 108; Significance: 9e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 11734297 - 11734138
Alignment:
Q  42 ccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcattatactgaaggcgctgagctta 141  Q
    |||| ||||||||||||| | || |||||||||||||| ||||||  ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  11734297 ccgtttggtcagatctttcgtcctgataattttgtgttcggtcagtctggtgctgggaataattgggctaaaggtcattataccgaaggcgctgagctta 11734198  T
Q  142 ttgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta 201  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  11734197 ttgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggta 11734138  T

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Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 40919700 - 40919556
Alignment:
Q  57 tttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttg 156  Q
    ||||| || ||||| ||||||||||| || | ||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||    
T  40919700 tttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttg 40919601  T
Q  157 atgttgttaggaaagaagctgagaattgtgattgcttgcagggta 201  Q
    |||||||| | ||||||||||||||||| || |||||||| ||||    
T  40919600 atgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta 40919556  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 45319421 - 45319505
Alignment:
Q  117 cattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta 201  Q
    ||||| ||||| || || ||||| ||||| | ||||||||||||||| ||||| || | ||||||||||||||||||||| ||||    
T  45319421 cattacactgagggtgccgagctcattgactttgttcttgatgttgtaaggaaggaggttgagaattgtgattgcttgcaaggta 45319505  T

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Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 53148313 - 53148130
Alignment:
Q  18 actatggacagtatccggtctggaccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggc 117  Q
    |||||||| |||||| | ||||| ||||  ||| |||||||| | || |||||||| |||||||| ||   ||||||||| ||||| ||||| ||||| |    
T  53148313 actatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtc 53148214  T
Q  118 attatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta 201  Q
    ||||||| ||||| |||||| | ||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||||    
T  53148213 attataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta 53148130  T

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Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 34839868 - 34839953
Alignment:
Q  105 tgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattg 190  Q
    ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||| | ||||||||||||||||| |||||    
T  34839868 tgggcgaaaggtcattacactgaaggcgctgaacttattgattcagttctcgatgttgttcgtaaagaagctgagaattgcgattg 34839953  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 45454520 - 45454432
Alignment:
Q  102 aactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattg 190  Q
    |||||||| ||||| || ||||| ||||| |||||| | |||||||| || ||||||||||| ||||| || |||||||||||||||||    
T  45454520 aactgggcgaaaggtcactatacagaaggagctgagttgattgattcggtgcttgatgttgtcaggaaggaggctgagaattgtgattg 45454432  T

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