View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_low_10 (Length: 357)
Name: NF3382_low_10
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 338
Target Start/End: Original strand, 46201486 - 46201800
Alignment:
| Q |
24 |
cccaaaccaccaccaccaccgactttcagcattcgtttcttatctgttctatcttctttcaaaattctagcaccaccattgaattcctttatctttcctc |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46201486 |
cccaaaccaccaccaccaccaacttttagcaatcgtttcttatccgttctatcttctttcaaaattctaacaccaccattgaattcctttatctttccta |
46201585 |
T |
|
| Q |
124 |
tacaaaacccactattttatttctcagattagagatgtttaaaattcctaaccacctccttttctcatgttttccggccagcatgtggtcgccggtcgcc |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
46201586 |
tacaaaacccactattttattgatcagattggagatgttgaaaattccaaaccaccttcttttctcatgttttctggccaccatgtggtcgccggtcgcc |
46201685 |
T |
|
| Q |
224 |
gacaattcaccgccgcgcctgaaaagtggttcatggccttctattctaaacgaatgggtacaaagaaagacatacatctggcctccattcaacaaaattt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |
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| T |
46201686 |
gacaattcaccgccgcgcctgaaaagtggttcatggccttctattctaaacgaatgggtacaaagaaagacatacatatggacttcattcaacaaaattt |
46201785 |
T |
|
| Q |
324 |
ccagaaaataattta |
338 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
46201786 |
ccataaaataattta |
46201800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 334
Target Start/End: Complemental strand, 28590677 - 28590367
Alignment:
| Q |
24 |
cccaaaccaccaccaccaccgactttcagcattcgtttcttatctgttctatcttctttcaaaattctagcaccaccattgaattcctttatctttcctc |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
28590677 |
cccaaaccaccaccaccaccaactttcagcaatcgtttcttattcgttctatattctttcaaaattctaccaccaccattgaattcctttaactttcctc |
28590578 |
T |
|
| Q |
124 |
tacaaaacccactattttatttctcagattagagatgtttaaaattcctaaccacctccttttctcatgttttccggccagcatgtggtcgccggtcgcc |
223 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
28590577 |
tacaaaacccactattttattgcttagattggagatgttgaaaattccaaaccacctccttttctcatgttttccggccaccatgtggtagccggtcgcc |
28590478 |
T |
|
| Q |
224 |
gacaattcaccgccgcgcctgaaaagtggttcatggccttctattctaaacgaatgggtacaaagaaagacatacatctggcctccattcaacaaaattt |
323 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
28590477 |
gacaattcactaccgcgcctgaaaagtggttcatggccttctattctaaatgaatgggtacaaagaaagacatacatatggcattcattcaacaaaattt |
28590378 |
T |
|
| Q |
324 |
ccagaaaataa |
334 |
Q |
| |
|
|||||||||| |
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|
| T |
28590377 |
tcagaaaataa |
28590367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 621022 - 621070
Alignment:
| Q |
261 |
cttctattctaaacgaatgggtacaaagaaagacatacatctggcctcc |
309 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||||| |
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|
| T |
621022 |
cttctattctaaatgaatgggtacaaagaaagacatacatatgtcctcc |
621070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 1577134 - 1577086
Alignment:
| Q |
261 |
cttctattctaaacgaatgggtacaaagaaagacatacatctggcctcc |
309 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||||| |
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|
| T |
1577134 |
cttctattctaaatgaatgggtacaaagaaagacatacatatgtcctcc |
1577086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 9082760 - 9082712
Alignment:
| Q |
261 |
cttctattctaaacgaatgggtacaaagaaagacatacatctggcctcc |
309 |
Q |
| |
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|||||||| |||| ||| |||||||||||||||||||||| || ||||| |
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| T |
9082760 |
cttctattttaaatgaacgggtacaaagaaagacatacatatgtcctcc |
9082712 |
T |
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