View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_low_12 (Length: 245)
Name: NF3382_low_12
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44003597 - 44003817
Alignment:
| Q |
1 |
ccgctttagacatactacatgttactattttaagcaggtttcactaattaggataataataaatcaatcagctagctagtagtttgtagaaacaaacaca |
100 |
Q |
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| T |
44003597 |
ccgctttagacatac---atgttactattttaagcaggtttcactaattaggataa---taaatcaatcagctagctagtagtttgtagaaacaaacaca |
44003690 |
T |
|
| Q |
101 |
aacggttacataaacagcatcgaaatgtttttgtatcaatgaatattacctcaaacagatgatcaagaaagaagtgagtcaaagagccagcagatatcaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003691 |
aacggttacataaacagcatcgaaatgttattgtatcaatgaatattacctcaaacagatgatcaagaaagaagtgagtcaaagagccagcagatatcaa |
44003790 |
T |
|
| Q |
201 |
gaacaaacattgcatcttagtaagtgg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44003791 |
gaacaaacattgcatcttagtaagtgg |
44003817 |
T |
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