View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_low_15 (Length: 237)
Name: NF3382_low_15
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 21753458 - 21753260
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattttattttgaaggataacacaatatgaaaatattcatccccccagatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | | || |
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| T |
21753458 |
taaatttttaaccacgtatattgatctttcaactactatttttgcttatattttattttgaaggataaaacattatgaaaatattcatcccccaa-agga |
21753360 |
T |
|
| Q |
101 |
atcttctttcatctaggcacatcattaaaagcttcattagtgtgtaaatctactcccttctcaaggtgtctccctccctgtatctaaatctctcttcttc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21753359 |
atcttctttcatctaggcacatcattaaaagcttcattagtgtgtaaatctactcccttctcaaggtgtctccctccctgtttctaaatctctcttcttc |
21753260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25548059 - 25548111
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattt |
53 |
Q |
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||||||||||||||||| ||||| |||||||||| ||||||||||| |||| |
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| T |
25548059 |
taaatttttaaccacgtgcattgacatttcaactaccacttttgcttacattt |
25548111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 31488594 - 31488645
Alignment:
| Q |
5 |
tttttaaccacgtatattgatctttcaactacaacttttgcttatattttatt |
57 |
Q |
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|
||||||||||||||||||||| |||||||||| | |||||||||||||||||| |
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|
| T |
31488594 |
tttttaaccacgtatattgatttttcaactac-atttttgcttatattttatt |
31488645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39591253 - 39591310
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattttattt |
58 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||| |||||||||||||||| |||| |
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|
| T |
39591253 |
taaatttttaaccacatacattgacctttcaactagcacttttgcttatatttcattt |
39591310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21692513 - 21692565
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattt |
53 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||| | |||||||||||||| |
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|
| T |
21692513 |
taaatttttaaccacatacattgacctttcaactaccatttttgcttatattt |
21692565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27831696 - 27831644
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattt |
53 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||| ||||||||| |||||| |
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|
| T |
27831696 |
taaatttttaaccacatgcattgagctttcaactaccacttttgctaatattt |
27831644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34579314 - 34579375
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattttattttgaa |
62 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| || ||| |||||||| |||||||| |
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| T |
34579314 |
taaatttttaaccacgtacgttgatttttcaactactacctttctttatatttcattttgaa |
34579375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35636073 - 35636017
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattttatt |
57 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| |||||| |||| |||||||| |
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|
| T |
35636073 |
taaatttttaaccatatgtattgatttttcaactaccacttttacttaaattttatt |
35636017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35990578 - 35990630
Alignment:
| Q |
1 |
taaatttttaaccacgtatattgatctttcaactacaacttttgcttatattt |
53 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||| ||||||||||||||| |
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|
| T |
35990578 |
taaatttttaaccacatacattgacttttcaactaccgcttttgcttatattt |
35990630 |
T |
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