View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3382_low_2 (Length: 531)

Name: NF3382_low_2
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3382_low_2
NF3382_low_2
[»] chr7 (8 HSPs)
chr7 (19-347)||(46443635-46443959)
chr7 (375-456)||(46757449-46757530)
chr7 (368-456)||(27599229-27599317)
chr7 (399-464)||(46759196-46759261)
chr7 (385-453)||(12732282-12732350)
chr7 (368-456)||(27600037-27600125)
chr7 (392-454)||(40905729-40905791)
chr7 (354-392)||(46756274-46756312)
[»] chr1 (17 HSPs)
chr1 (357-521)||(11469642-11469806)
chr1 (354-464)||(11469085-11469195)
chr1 (354-464)||(14925276-14925386)
chr1 (356-480)||(14924680-14924805)
chr1 (373-480)||(31788193-31788301)
chr1 (354-470)||(31787482-31787598)
chr1 (385-454)||(38618265-38618334)
chr1 (364-456)||(7464012-7464104)
chr1 (364-456)||(11426867-11426959)
chr1 (364-456)||(11427449-11427541)
chr1 (385-456)||(7463450-7463521)
chr1 (405-464)||(9430494-9430553)
chr1 (375-477)||(31389085-31389188)
chr1 (357-456)||(37890475-37890574)
chr1 (368-465)||(46134549-46134647)
chr1 (385-450)||(2687675-2687740)
chr1 (385-445)||(37889914-37889974)
[»] chr4 (22 HSPs)
chr4 (354-531)||(6247337-6247515)
chr4 (355-480)||(10421497-10421624)
chr4 (354-453)||(6246788-6246887)
chr4 (354-480)||(15481487-15481614)
chr4 (399-464)||(10420966-10421031)
chr4 (404-478)||(50709713-50709787)
chr4 (355-456)||(15481040-15481141)
chr4 (385-466)||(50710349-50710430)
chr4 (379-465)||(6680275-6680361)
chr4 (385-466)||(53664247-53664328)
chr4 (404-476)||(53665008-53665080)
chr4 (368-456)||(30809447-30809535)
chr4 (368-456)||(45331395-45331483)
chr4 (404-446)||(13856645-13856687)
chr4 (375-453)||(30808646-30808724)
chr4 (392-454)||(34956326-34956388)
chr4 (392-454)||(50709034-50709096)
chr4 (377-480)||(22499891-22499995)
chr4 (368-419)||(232028-232079)
chr4 (386-445)||(2093865-2093924)
chr4 (402-464)||(52493009-52493071)
chr4 (368-456)||(45330583-45330671)
[»] chr8 (13 HSPs)
chr8 (354-521)||(12349971-12350138)
chr8 (354-464)||(12350588-12350698)
chr8 (354-480)||(43924934-43925062)
chr8 (354-470)||(43971282-43971398)
chr8 (373-480)||(43972003-43972111)
chr8 (357-464)||(43924497-43924604)
chr8 (372-470)||(39257656-39257754)
chr8 (380-478)||(38686333-38686431)
chr8 (385-478)||(33801534-33801627)
chr8 (395-480)||(39258365-39258452)
chr8 (385-466)||(33802305-33802386)
chr8 (389-466)||(38686987-38687064)
chr8 (393-456)||(15183790-15183853)
[»] chr5 (7 HSPs)
chr5 (368-480)||(4554675-4554787)
chr5 (368-456)||(4555331-4555419)
chr5 (368-464)||(4789538-4789634)
chr5 (368-465)||(4820472-4820570)
chr5 (373-456)||(6804775-6804858)
chr5 (368-429)||(26712357-26712418)
chr5 (368-429)||(26982095-26982156)
[»] chr3 (7 HSPs)
chr3 (354-480)||(38337393-38337521)
chr3 (357-480)||(38336951-38337074)
chr3 (364-464)||(44022021-44022121)
chr3 (385-443)||(15450260-15450318)
chr3 (385-453)||(55124449-55124517)
chr3 (389-464)||(49287726-49287801)
chr3 (386-442)||(11267642-11267698)
[»] scaffold0189 (2 HSPs)
scaffold0189 (354-456)||(12801-12903)
scaffold0189 (354-480)||(12188-12317)
[»] chr6 (2 HSPs)
chr6 (357-480)||(27763420-27763544)
chr6 (385-480)||(34034203-34034299)
[»] chr2 (15 HSPs)
chr2 (354-464)||(4993608-4993718)
chr2 (354-464)||(4975700-4975810)
chr2 (373-480)||(4976422-4976530)
chr2 (373-480)||(4994329-4994437)
chr2 (386-478)||(8536806-8536898)
chr2 (368-464)||(41519859-41519955)
chr2 (368-456)||(37545694-37545782)
chr2 (364-456)||(42369657-42369749)
chr2 (380-466)||(8536167-8536253)
chr2 (374-464)||(42370884-42370974)
chr2 (368-480)||(1271249-1271352)
chr2 (373-456)||(41768685-41768768)
chr2 (354-396)||(41985894-41985936)
chr2 (368-416)||(15602802-15602850)
chr2 (368-416)||(36390975-36391023)
[»] scaffold0071 (1 HSPs)
scaffold0071 (385-443)||(11873-11931)
[»] scaffold0119 (2 HSPs)
scaffold0119 (421-480)||(36567-36626)
scaffold0119 (368-480)||(29885-29988)
[»] scaffold0041 (1 HSPs)
scaffold0041 (392-454)||(44227-44289)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 46443635 - 46443959
Alignment:
Q  19 acatgagcatgacagcttatgttttagatttgcaaattgagtcatatttttgagttataaatttccgttaaaaaattcaagtttaataatattaagcgat 118  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||     | ||||    
T  46443635 acatgagcatgccagcttatgttttagatttgccaattgagtcatattttttagttaaaaatttccgttaaaaaattcaagtttaataa-----accgat 46443729  T
Q  119 cattatgctatgtttgaagggatatatcatataaaagatgatttgtgaagttcatatacaaaatttcacgttgacatattttacatccaa-nnnnnnnnn 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  46443730 cattatgatatgtttgaagggatatatcatataaaagatgatttgtgaagttcatatacaaaatttcacgttgacatattttacatccaatttttttaca 46443829  T
Q  218 nnnnnnnnttgcatccaaactaaacacnnnnnnnncaatttaggaagaaacttgtttcattttaaacttgtgttaggtaagtcactcaagttagtgatat 317  Q
            ||| ||||||| ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46443830 aaaaaaaattgtatccaaattaaacatttttttttcaatttaggaagaaacttgtttcattttaaacttgtgttaggtaagtcactcaagttagtgatat 46443929  T
Q  318 gtgccgtaaagtgaccaactcacgacgaaa 347  Q
    ||||   ||||| ||||||||| |||||||    
T  46443930 gtgcgacaaagttaccaactcatgacgaaa 46443959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 375 - 456
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  375 agttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 27599229 - 27599317
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||| ||||||||  |||||||||||| |||| |||||||||||||| |||||  ||||| | | ||||||||||||||||||||||    
T  27599229 aaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 27599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 46759261 - 46759196
Alignment:
Q  399 taattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||    
T  46759261 taatcttgaccattagataaagtagagaacatacttctattatacatacttaacaccagatttttt 46759196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 453
Target Start/End: Original strand, 12732282 - 12732350
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    |||||||||||| | ||| ||||||||||||| | ||| |||||||| ||||||||||||| |||||||    
T  12732282 caccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 27600125 - 27600037
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||| ||||||||  |||||||||||| |||| |||||||| ||||| |||||  ||||| | | ||||||||||| ||||||||||    
T  27600125 aaaggggagttgtttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactctcaacacca 27600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 40905791 - 40905729
Alignment:
Q  392 ggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    ||||| |||||||||||| |||||| || || |||||| | ||||||||||||| ||||||||    
T  40905791 ggaaagttaattttgacccttagatcaaataaagaacacatttttatcatagactctcaacac 40905729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 46756274 - 46756312
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgg 392  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  46756274 gcgtttaatttgggaaagggaagttgttttccaccatgg 46756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 357 - 521
Target Start/End: Complemental strand, 11469806 - 11469642
Alignment:
Q  357 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11469806 tttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacacca 11469707  T
Q  457 gattttttcccacactcaccactctcattcaacaccagattttctccctctcattcaaaccttat 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11469706 gattttttcccacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttat 11469642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 11469085 - 11469195
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||| | |||||||||||||||  ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11469085 gcgtttaatttaggaaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 11469184  T
Q  454 ccagatttttt 464  Q
    |||||||||||    
T  11469185 ccagatttttt 11469195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 354 - 464
Target Start/End: Complemental strand, 14925386 - 14925276
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    |||||||||||||  |||| |||||||||  ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14925386 gcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaaca 14925287  T
Q  454 ccagatttttt 464  Q
    |||||||||||    
T  14925286 ccagatttttt 14925276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 356 - 480
Target Start/End: Original strand, 14924680 - 14924805
Alignment:
Q  356 gtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacc 455  Q
    ||||||||||| |||||||||||||||  ||||||||||||  ||||||||||| ||| || || ||||||||||| |||||||||||||||||||||||    
T  14924680 gtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacacc 14924779  T
Q  456 aga-ttttttcccacactcaccactc 480  Q
    ||| |||||| |||||||||||||||    
T  14924780 agattttttttccacactcaccactc 14924805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 31788301 - 31788193
Alignment:
Q  373 gaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt-cccacac 471  Q
    ||||||||||  |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  31788301 gaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccagattttttacccacac 31788202  T
Q  472 tcaccactc 480  Q
    || ||||||    
T  31788201 tctccactc 31788193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 31787482 - 31787598
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||| | ||| || ||||||||||||  |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31787482 gcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactcaaca 31787581  T
Q  454 ccagattttttcccaca 470  Q
     |||||||||| |||||    
T  31787582 tcagatttttttccaca 31787598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 38618265 - 38618334
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    |||||||||||| |||| |||||||||||||| |||||| ||||| | | ||||||||||| ||||||||    
T  38618265 caccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctcaacac 38618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 7464104 - 7464012
Alignment:
Q  364 tggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||||   ||||  ||||||||||||| ||||||||||||| |||| || ||||||||| |  ||||||||||||  |||||||||    
T  7464104 tggaaaagggaaagagtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacacca 7464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 11426867 - 11426959
Alignment:
Q  364 tggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||||   ||||  ||||||||||||  |||||||||||||||||| || || |||||| | |||||||||||||  |||||||||    
T  11426867 tggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagaccatcaacacca 11426959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 11427541 - 11427449
Alignment:
Q  364 tggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||||   |||||  |||||||||||| ||||||||||||| |||| || ||||||||| |  ||||||||||||  |||||||||    
T  11427541 tggaaaagggaaagagttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacacca 11427449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 456
Target Start/End: Original strand, 7463450 - 7463521
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||||  |||||||||||||||||| || || |||||| | |||||||||||||  |||||||||    
T  7463450 caccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagaccatcaacacca 7463521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 9430553 - 9430494
Alignment:
Q  405 tgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    |||||||||||| ||||| |||||||| ||||||| || || |||||||| |||||||||    
T  9430553 tgaccattagattaagtaaagaacatagttttatcctaaactctcaacactagatttttt 9430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 31389085 - 31389188
Alignment:
Q  375 agttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagat-tttttcccacactc 473  Q
    ||||||||  || ||||||||| | | |||| || ||| ||| || ||||||||||| |||||| || |||| ||||||||| || ||||||||||||||    
T  31389085 agttgtttcccatcatgggaaagtcatttttaacgattggattaaatagagaacatagttttattatggacattcaacaccaaatgtttttcccacactc 31389184  T
Q  474 acca 477  Q
    ||||    
T  31389185 acca 31389188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 456
Target Start/End: Complemental strand, 37890574 - 37890475
Alignment:
Q  357 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||| ||||||||||||    |||||  |||||||||||| ||||||||||||| |||| ||  |||||||| |  ||||||||||||  |||||||||    
T  37890574 tttaacttggaaaagggagagagttttctaccatgggaaaactaattttgaccatcagattaacaagagaacacaactttatcatagaccatcaacacca 37890475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 465
Target Start/End: Complemental strand, 46134647 - 46134549
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaa-ttaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttc 465  Q
    |||||||||||||||  || |||||||||| ||| |||| |||||||||| || || ||| |||  | |||||| ||||||||| ||| ||||||||||    
T  46134647 aaagggaagttgtttcccatcatgggaaaacttactttttaccattagatcaaatatagaccatgatgttatcaaagacactcaccacaagattttttc 46134549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 2687740 - 2687675
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactca 450  Q
    |||||||||||||||| |||||||  |||||| || ||  ||||||| ||||||||||||| ||||    
T  2687740 caccatgggaaaattatttttgacagttagattaactaaggaacatagttttatcatagactctca 2687675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 37889914 - 37889974
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagac 445  Q
    ||||||||||||   ||||||||||||||||| || || |||||| | |||||||||||||    
T  37889914 caccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 354 - 531
Target Start/End: Complemental strand, 6247515 - 6247337
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatactttt-atcatagacactcaac 452  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  6247515 gcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacactcaac 6247416  T
Q  453 accagattttttcccacactcaccactctcattcaacaccagattttctccctctcattcaaaccttatcatctcagga 531  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  6247415 accagatttttttccacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttatcagctcagga 6247337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 355 - 480
Target Start/End: Complemental strand, 10421624 - 10421497
Alignment:
Q  355 cgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    |||||||||||| |||||||||||||||| ||||||||||||  ||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||    
T  10421624 cgtttaatttgggaaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacac 10421525  T
Q  455 cagatt--ttttcccacactcaccactc 480  Q
    ||||||  |||| |||||||||||||||    
T  10421524 cagatttttttttccacactcaccactc 10421497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 354 - 453
Target Start/End: Original strand, 6246788 - 6246887
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||| |||||||| ||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6246788 gcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 6246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 354 - 480
Target Start/End: Complemental strand, 15481614 - 15481487
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||  |||||||||||||||  ||| ||||||||| |||||||||||  ||||| || ||||||||||| |||||||||||| ||||||||    
T  15481614 gcgtttaatttgcgaaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaaca 15481515  T
Q  454 ccagatt-ttttcccacactcaccactc 480  Q
    ||||||| |||| |||||||||||||||    
T  15481514 ccagattttttttccacactcaccactc 15481487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 10420966 - 10421031
Alignment:
Q  399 taattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  10420966 taattttgaccattagataaactagataacatacttttatcatagacactcaacaccagatttttt 10421031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 404 - 478
Target Start/End: Original strand, 50709713 - 50709787
Alignment:
Q  404 ttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcccacactcaccac 478  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||  ||||||||||||    
T  50709713 ttgactattagataaagtagagaacatagttttatcatagacactcaacaccaaatcttttttcacactcaccac 50709787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 456
Target Start/End: Original strand, 15481040 - 15481141
Alignment:
Q  355 cgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    ||||||||||||  ||||||||||||||  |  |||||||||  ||||||||||| |||||| || ||||||||||| ||||||||||||| ||||||||    
T  15481040 cgtttaatttggggaagggaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacac 15481139  T
Q  455 ca 456  Q
    ||    
T  15481140 ca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 50710430 - 50710349
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcc 466  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||   ||||||||||||||||||||||| || ||||||    
T  50710430 caccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacaccaaatattttcc 50710349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 6680361 - 6680275
Alignment:
Q  379 gtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttc 465  Q
    |||| ||||||||||||| | ||| ||||||||||||| ||||| |||||||| ||||||||||||  |||||||| ||||||||||    
T  6680361 gtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacactagattttttc 6680275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 53664247 - 53664328
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcc 466  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||||  ||||||||||||||||||||| || || ||||||    
T  53664247 caccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaacatcaaatcttttcc 53664328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 476
Target Start/End: Complemental strand, 53665080 - 53665008
Alignment:
Q  404 ttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcccacactcacc 476  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||||||||| || ||||  ||||||||||    
T  53665080 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacaccaaatcttttttcacactcacc 53665008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 30809535 - 30809447
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||| ||||||||| ||||||| |||| |||| |||||||| ||||| |||||  ||||| | ||||||||||||| ||||||||||    
T  30809535 aaaggggagttgttttccaccatgagaaagttaaatttgaccactagattaagtaatgaacacatttttatcatagactctcaacacca 30809447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 45331483 - 45331395
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||| ||||||||  ||||||| |||| |||| |||||||||||||| |||||  ||||| | | ||||||||||||||||||||||    
T  45331483 aaaggggagttgtttcccaccatgagaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 45331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  404 ttgaccattagataaagtagagaacatacttttatcatagaca 446  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 30808646 - 30808724
Alignment:
Q  375 agttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||  |||||||||||| |||| |||||||||||||| |||||  ||| | | | |||||||||||||||||||    
T  30808646 agttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaatacattcttatcatagacactcaaca 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 34956326 - 34956388
Alignment:
Q  392 ggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    ||||| |||||||||||| |||||| ||||| |||||| | ||||||||||||| ||||||||    
T  34956326 ggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacac 34956388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 50709034 - 50709096
Alignment:
Q  392 ggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    ||||| |||||||||||| |||||| ||||| |||||| | ||||||||||||| ||||||||    
T  50709034 ggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacac 50709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 480
Target Start/End: Complemental strand, 22499995 - 22499891
Alignment:
Q  377 ttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccaga-ttttttcccacactcac 475  Q
    ||||||| |||||| ||||| ||| |||  |||||| ||| || ||||||||||| ||||||||| |||  ||| || || | |||||||||||||||||    
T  22499995 ttgttttccaccataggaaagttattttaaaccattggatcaaatagagaacatagttttatcatggactttcagcatcaaatttttttcccacactcac 22499896  T
Q  476 cactc 480  Q
    |||||    
T  22499895 cactc 22499891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 232079 - 232028
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaa 419  Q
    |||||||||||||||  |||||||||||| | |||||| |||||||||||||    
T  232079 aaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataaa 232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 2093924 - 2093865
Alignment:
Q  386 accatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagac 445  Q
    ||||||||||| ||| | |||| |||||||| || || ||||||||||||||||||||||    
T  2093924 accatgggaaagttattattgatcattagatcaaatatagaacatacttttatcatagac 2093865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 464
Target Start/End: Complemental strand, 52493071 - 52493009
Alignment:
Q  402 ttttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    ||||||||||| ||| || || |||||||| ||||||||| ||||||||| || |||||||||    
T  52493071 ttttgaccattggatcaactaaagaacataattttatcatggacactcaatacaagatttttt 52493009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 45330583 - 45330671
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||| ||||||||  |||||||| ||| |||| |||||||| ||||| |||||  ||| | | | ||||||||||| ||||||||||    
T  45330583 aaaggggagttgtttcccaccatggaaaagttaaatttgaccactagattaagtaatgaatacattcttatcatagactctcaacacca 45330671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 354 - 521
Target Start/End: Original strand, 12349971 - 12350138
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||| |||||||||||||||  |||||||| |||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12349971 gcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaaca 12350070  T
Q  454 ccagattttttcccacactcaccactctcattcaacaccagattttctccctctcattcaaaccttat 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12350071 ccagattttttcccacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttat 12350138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 354 - 464
Target Start/End: Complemental strand, 12350698 - 12350588
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||| |||||||| ||||||  ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12350698 gcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 12350599  T
Q  454 ccagatttttt 464  Q
    |||||||||||    
T  12350598 ccagatttttt 12350588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 354 - 480
Target Start/End: Complemental strand, 43925062 - 43924934
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||| |||||||||||||||  ||||||| |||| |||||||||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  43925062 gcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 43924963  T
Q  454 ccagatt--ttttcccacactcaccactc 480  Q
    |||||||  |||| |||||||||||||||    
T  43924962 ccagatttttttttccacactcaccactc 43924934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 43971282 - 43971398
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||| | |||||| | ||||||||||  ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  43971282 gcgtttagtatggaaatgagaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 43971381  T
Q  454 ccagattttttcccaca 470  Q
     |||| ||||| |||||    
T  43971382 tcagaattttttccaca 43971398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 43972111 - 43972003
Alignment:
Q  373 gaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttt-tcccacac 471  Q
    ||||||||||  ||| |||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccagatttttcacccacac 43972012  T
Q  472 tcaccactc 480  Q
    || ||||||    
T  43972011 tctccactc 43972003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 464
Target Start/End: Original strand, 43924497 - 43924604
Alignment:
Q  357 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||||||| |||||||||||||||  ||||||||||||  ||||||||||| |||||| || ||||||||||| |||||||||| |||||||||||||    
T  43924497 tttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacacca 43924596  T
Q  457 gatttttt 464  Q
     |||||||    
T  43924597 aatttttt 43924604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 372 - 470
Target Start/End: Original strand, 39257656 - 39257754
Alignment:
Q  372 ggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcccaca 470  Q
    |||||||||||  ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || ||||||| |||||    
T  39257656 ggaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaaatttttttccaca 39257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 380 - 478
Target Start/End: Original strand, 38686333 - 38686431
Alignment:
Q  380 tttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcccacactcaccac 478  Q
    |||| |||||||||||| | ||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| || ||||  ||||||||||||    
T  38686333 ttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacaccaaatcttttttcacactcaccac 38686431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 478
Target Start/End: Original strand, 33801534 - 33801627
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcccacactcaccac 478  Q
    |||||||| ||| | ||| |||||||||| ||||||||||||||||  |||||||||||||||||||||||| || ||||  ||||||||||||    
T  33801534 caccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactcaacaccaaatcttttttcacactcaccac 33801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 480
Target Start/End: Complemental strand, 39258452 - 39258365
Alignment:
Q  395 aaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt--cccacactcaccactc 480  Q
    ||||||||||| ||||||||||||| || |||||||||||||| | |||||||||||||||| |||||||  ||||||||| ||||||    
T  39258452 aaattaattttaaccattagataaactaaagaacatacttttaccgtagacactcaacaccatatttttttacccacactctccactc 39258365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 33802386 - 33802305
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcc 466  Q
    |||||||||||| | ||| |||||||||| ||||| ||||||||||  ||||||||||||||||||||| || || ||||||    
T  33802386 caccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaacatcaaatcttttcc 33802305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 38687064 - 38686987
Alignment:
Q  389 atgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcc 466  Q
    |||||||| | ||| |||| ||||||||||||||||||||||  ||||||||||||||||||||| || || ||||||    
T  38687064 atgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaacatcaaatattttcc 38686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 15183853 - 15183790
Alignment:
Q  393 gaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||| ||||||||||||||||||||||||||| |||||  |||||||| |||||||||| ||||    
T  15183853 gaaagttaattttgaccattagataaagtagaaaacatgattttatcacagacactcaaaacca 15183790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 4554675 - 4554787
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttccc 467  Q
    ||||| || ||||||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  4554675 aaaggaaaattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccaggtttttttcc 4554774  T
Q  468 acactcaccactc 480  Q
    |||||||||||||    
T  4554775 acactcaccactc 4554787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 4555419 - 4555331
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||||||||||||   |||||||||||  ||||||||| | || |||||||| ||||||||||||||||| ||||||||||||||||    
T  4555419 aaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacacca 4555331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 464
Target Start/End: Original strand, 4789538 - 4789634
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    |||||| ||||||||  |||||||||||| ||| | ||||||||||||| || | ||||||||  |||||| ||| || |||||||| |||||||||    
T  4789538 aaaggggagttgtttcccaccatgggaaagttattcttgaccattagatcaaatggagaacatgattttattataaaccctcaacacaagatttttt 4789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 465
Target Start/End: Original strand, 4820472 - 4820570
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaatttt-gaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttc 465  Q
    |||||||| ||||||| |||||||||||| ||  |||| | |||||||||  ||||   |||||| ||||||||| |||||||||||| ||||||||||    
T  4820472 aaagggaaattgttttccaccatgggaaattttttttttgtccattagattgagtaagaaacataattttatcatggacactcaacacaagattttttc 4820570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 6804858 - 6804775
Alignment:
Q  373 gaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||  |||||||||||| | ||||||||||||||||| | ||| |||||| |   ||||||||| | ||||||||||    
T  6804858 gaagttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacacca 6804775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 26712418 - 26712357
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaaca 429  Q
    |||||||||||||||  ||||||||||||  ||||||| ||||| |||| ||||| ||||||    
T  26712418 aaagggaagttgtttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaaca 26712357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 26982156 - 26982095
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaaca 429  Q
    |||||||||||||||  ||||||||||||  ||||||| ||||| |||| ||||| ||||||    
T  26982156 aaagggaagttgtttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaaca 26982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 354 - 480
Target Start/End: Complemental strand, 38337521 - 38337393
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||| |||||||||||||||  ||||||||||||  ||||||||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  38337521 gcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 38337422  T
Q  454 ccagatt--ttttcccacactcaccactc 480  Q
    |||||||  |||| |||||||||||||||    
T  38337421 ccagatttttttttccacactcaccactc 38337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 357 - 480
Target Start/End: Original strand, 38336951 - 38337074
Alignment:
Q  357 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||  ||||||||||||||  ||||||||||||  ||||||||||| |||||| || ||||||||||| |||||||  |||||||||||||||    
T  38336951 tttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactcaacacca 38337048  T
Q  457 ga--ttttttcccacactcaccactc 480  Q
     |  |||||| |||||||||||||||    
T  38337049 aatttttttttccacactcaccactc 38337074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 44022121 - 44022021
Alignment:
Q  364 tggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattaga-taaagtagagaacatacttttatcatagacactcaacaccagatttt 462  Q
    |||||||||  ||||||||| |||||||||||||  || ||||||||||||| |||| ||| |||||||||||||||||| |||||||||||  ||||||    
T  44022121 tggaaaaggagagttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacacatgatttt 44022023  T
Q  463 tt 464  Q
    ||    
T  44022022 tt 44022021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 15450260 - 15450318
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatag 443  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||||||    
T  15450260 caccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 453
Target Start/End: Original strand, 55124449 - 55124517
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    |||||||||||||| ||| ||||| ||||||| | ||| |||||||| ||||||||||||  |||||||    
T  55124449 caccatgggaaaataaatattgactattagatcatgtaaagaacatagttttatcatagattctcaaca 55124517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 49287726 - 49287801
Alignment:
Q  389 atgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    ||||||||||||||||  ||  |||||| ||||| |||||||| | |||||||| || |||||||||| |||||||    
T  49287726 atgggaaaattaatttaaacggttagattaagtatagaacatagtcttatcatacactctcaacaccaaatttttt 49287801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 11267698 - 11267642
Alignment:
Q  386 accatgggaaaattaattttgaccattagataaagtagagaacatacttttatcata 442  Q
    ||||||||||||| |||||| |||||||||| || || ||| |||||| ||||||||    
T  11267698 accatgggaaaataaattttaaccattagattaaataaagagcatactcttatcata 11267642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 456
Target Start/End: Complemental strand, 12903 - 12801
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    |||||||||||||  ||| ||||||||||  |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12903 gcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaaca 12804  T
Q  454 cca 456  Q
    |||    
T  12803 cca 12801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 354 - 480
Target Start/End: Original strand, 12188 - 12317
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||||||||| |||| ||||||||||  ||||||| ||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  12188 gcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 12287  T
Q  454 ccaga---ttttttcccacactcaccactc 480  Q
     ||||   |||||| |||||||||||||||    
T  12288 tcagattttttttttccacactcaccactc 12317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 357 - 480
Target Start/End: Original strand, 27763420 - 27763544
Alignment:
Q  357 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||  ||||||||||||||  ||||| ||||||| ||||||||||| |||||| || ||||||||||| |||||||| |||||||||||||||    
T  27763420 tttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacacca 27763519  T
Q  457 ga-ttttttcccacactcaccactc 480  Q
    || |||||| |||||||||||||||    
T  27763520 gattttttttccacactcaccactc 27763544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 480
Target Start/End: Original strand, 34034203 - 34034299
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccaga-ttttttcccacactcaccactc 480  Q
    |||||||||||| ||| |||  |||||| ||| || ||||||||||| ||||||||| |||  ||| || || | ||||||||||||||||||||||    
T  34034203 caccatgggaaagttattttaaaccattggatcaaatagagaacatagttttatcatggactttcagcatcaaatttttttcccacactcaccactc 34034299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 4993608 - 4993718
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||| | ||| || ||||||||||||| |||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  4993608 gcgtttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 4993707  T
Q  454 ccagatttttt 464  Q
     ||||||||||    
T  4993708 tcagatttttt 4993718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 4975700 - 4975810
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaaca 453  Q
    ||||||| | ||| || ||||||||||||  |||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  4975700 gcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 4975799  T
Q  454 ccagatttttt 464  Q
     ||||||||||    
T  4975800 tcagatttttt 4975810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 4976530 - 4976422
Alignment:
Q  373 gaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttt-tcccacac 471  Q
    ||||||||||  ||| |||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaatttttcacccacac 4976431  T
Q  472 tcaccactc 480  Q
    || ||||||    
T  4976430 tctccactc 4976422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 4994437 - 4994329
Alignment:
Q  373 gaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttt-tcccacac 471  Q
    ||||||||||  ||| |||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaatttttcacccacac 4994338  T
Q  472 tcaccactc 480  Q
    || ||||||    
T  4994337 tctccactc 4994329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 8536898 - 8536806
Alignment:
Q  386 accatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcccacactcaccac 478  Q
    ||||||| ||| | ||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| || ||||  ||||||||||||    
T  8536898 accatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactcaacaccaaatcttttttcacactcaccac 8536806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 368 - 464
Target Start/End: Complemental strand, 41519955 - 41519859
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    ||||||||||| |||  |||||||||||| ||  |||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  41519955 aaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacaccaaatttttt 41519859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 37545694 - 37545782
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    |||||||||||||||  |||||||||||| |||| |||||||||||||| |||||  ||||| | | ||||||||||||||||||||||    
T  37545694 aaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 42369657 - 42369749
Alignment:
Q  364 tggaaaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||| |||||||||    |||||||||| | ||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42369657 tggaaaaggaaagttgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 466
Target Start/End: Original strand, 8536167 - 8536253
Alignment:
Q  380 tttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttcc 466  Q
    |||| |||||||||||| | ||| ||||| |||||||||||||||||||||  ||||||||||||||||||||| || || ||||||    
T  8536167 ttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaacatcaaatattttcc 8536253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 464
Target Start/End: Complemental strand, 42370974 - 42370884
Alignment:
Q  374 aagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagatttttt 464  Q
    |||||||||  |||||||||||| | ||| ||| |||||||||||||| ||||| ||| ||||||||||||||||| |||||| |||||||    
T  42370974 aagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacactcgacaccaaatttttt 42370884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 1271249 - 1271352
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttccc 467  Q
    ||||| |||||||||| ||| ||||||||| ||||||| ||| ||||||||         ||||||| || |||||||||||||| |||||||||||| |    
T  1271249 aaaggaaagttgttttccactatgggaaaactaattttaaccgttagataa---------catacttctaccatagacactcaacgccagattttttctc 1271339  T
Q  468 acactcaccactc 480  Q
     ||||||| ||||    
T  1271340 gcactcactactc 1271352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 41768768 - 41768685
Alignment:
Q  373 gaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 456  Q
    ||||||||||  |||||||||||| | ||||||||||||||||| | ||| |||||| |   ||||||||| | ||||||||||    
T  41768768 gaagttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacacca 41768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 41985936 - 41985894
Alignment:
Q  354 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaa 396  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||    
T  41985936 gcgtttaatttgggaaagggaagttgttttccaccatgagaaa 41985894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 15602850 - 15602802
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagat 416  Q
    |||||||||||||||  ||||||||||||||   |||||||||||||||    
T  15602850 aaagggaagttgtttcccaccatgggaaaatattttttgaccattagat 15602802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 36390975 - 36391023
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagat 416  Q
    |||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  36390975 aaagggaagttgtttcccaccatgggaaagtaaattttaaccattagat 36391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 11931 - 11873
Alignment:
Q  385 caccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatag 443  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||||||    
T  11931 caccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 36626 - 36567
Alignment:
Q  421 tagagaacatacttttatcatagacactcaacaccagattttttcccacactcaccactc 480  Q
    |||| ||||||||| || ||||||||||||||||||||||||||| | ||||||| ||||    
T  36626 tagataacatacttctaccatagacactcaacaccagattttttctcgcactcactactc 36567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 480
Target Start/End: Complemental strand, 29988 - 29885
Alignment:
Q  368 aaagggaagttgtttttcaccatgggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccagattttttccc 467  Q
    ||||| |||||||||| ||| ||||||||| ||||||| ||| ||||||||         ||||||| || |||||||||||||| |||||||||||| |    
T  29988 aaaggaaagttgttttccactatgggaaaactaattttaaccgttagataa---------catacttctaccatagacactcaactccagattttttctc 29898  T
Q  468 acactcaccactc 480  Q
     ||||||| ||||    
T  29897 gcactcactactc 29885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 44227 - 44289
Alignment:
Q  392 ggaaaattaattttgaccattagataaagtagagaacatacttttatcatagacactcaacac 454  Q
    ||||| |||||||||||| |||||| || || |||||| | ||||||||||||| ||||||||    
T  44227 ggaaagttaattttgacccttagatcaaataaagaacacatttttatcatagactctcaacac 44289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University