View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_low_3 (Length: 515)
Name: NF3382_low_3
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 42710978 - 42711174
Alignment:
| Q |
18 |
atttttgttgtttctcaatctgtataatggcacctaacattagtagggagaagaaatgaaagagatatcacattgttgtctcatcacgtcaagaaaggta |
117 |
Q |
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| T |
42710978 |
atttttgttgtttctcaatctgtataatggcacctaacattagtagggagaagaaatgaaagagatatcacattgttgtctcatcacgtcaagaaaggta |
42711077 |
T |
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| Q |
118 |
attaaggatgaccttcaaaaatactaggcaagcttgttgatatggataagaagatgaatgtcatttcttctgcgttataggaaaaatggttgcacca |
214 |
Q |
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| T |
42711078 |
attaaggatgaccttaaaaaatactaggcaagcttgttgatatggataagaagatgaatgtcatttcttctgcgttataggaaaaatggttgcacca |
42711174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 297 - 505
Target Start/End: Original strand, 42711221 - 42711421
Alignment:
| Q |
297 |
acaatggagtttgttgtaggttctctagagtttattttcaaagttacccctaactttgatgtatcattttgaggttaaggacgcttttgagatgagggat |
396 |
Q |
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| T |
42711221 |
acaatggagtttgttgtaggttctctagagtttattttc---------cctaactttgatgtatcattttgaggttaaggacgcttttgagatgaaggat |
42711311 |
T |
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| Q |
397 |
ggttctgagatgaataca-atattgagggtcaatgacgatattttttgcttgtatttgtatttggtttgtgcatttggccatcacctaatacaattcggt |
495 |
Q |
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| T |
42711312 |
ggttctgagatgaataccgatattgagggtcaatgacgatgttttttgcttgtatttgtatttggtttgtgcatttggccatcacctaatacaattcggt |
42711411 |
T |
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| Q |
496 |
atttcctatg |
505 |
Q |
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| T |
42711412 |
atttcctatg |
42711421 |
T |
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