View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3382_low_5 (Length: 458)
Name: NF3382_low_5
Description: NF3382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3382_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 32996753 - 32996319
Alignment:
| Q |
9 |
accttcaacttcttcttcgtcgattcttcaatctcttcctcttcatgtggtatatatataaaacatgcatcaactttttcttccgttttcgtattcgatc |
108 |
Q |
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| T |
32996753 |
accttcaacttcttcttcgtcgattcttcaatctcttcctcttcatgtggtatatttataaaacatgcatcaactttttcttccgttttcgtattcgatc |
32996654 |
T |
|
| Q |
109 |
attctcatttctcgattatacgatgcactttgcctgcaattcagatgaattttgaatttaatttaattttataggttgtgtagttaaatgcttcataatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32996653 |
attctcatttctcgattatacgatgcactttgcctgcaattcagatgaattttgaatttaatttaattttataggttgtgtagttaaatgcttcataatt |
32996554 |
T |
|
| Q |
209 |
ttacttgttcatgagcgcatctgatagctgagtggtataattgatttcgtttttgaagttcagttcacaatctatgnnnnnnngaaagaattaattgaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
32996553 |
ttacttgttcatgagcgcatctgatagctgagtggtataattgatttcgtttttgaagttcagttcacaatctatgaaaaaaagaaagaattatttgaac |
32996454 |
T |
|
| Q |
309 |
ttaatcacatgtgtccgtgttggggacacgctttccatcagaagtgttagagttcatggtgaagttgtaattttgtgttgtttgtgagtgtgaatgatga |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32996453 |
ttaatcacatgtgtccgtgttggggacacgctttccatcagaagtgttagagttcatagtgaagttgtaattttgtgttgtttgtgagtgtgaatgatga |
32996354 |
T |
|
| Q |
409 |
gagagtgttgttaattattttgtagatagagtggt |
443 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32996353 |
gagagtgttgttaattattttgtagatagagtggt |
32996319 |
T |
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